View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_high_24 (Length: 340)

Name: NF7824_high_24
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_high_24
NF7824_high_24
[»] chr7 (19 HSPs)
chr7 (20-333)||(26191109-26191422)
chr7 (20-327)||(26203744-26204051)
chr7 (20-287)||(26242287-26242554)
chr7 (20-333)||(19103537-19103850)
chr7 (20-322)||(26128422-26128724)
chr7 (20-322)||(26155058-26155360)
chr7 (20-322)||(26223387-26223689)
chr7 (20-286)||(26250736-26251002)
chr7 (20-243)||(26179017-26179240)
chr7 (20-238)||(26297384-26297602)
chr7 (93-322)||(26301666-26301895)
chr7 (19-205)||(26087753-26087939)
chr7 (19-205)||(26111541-26111727)
chr7 (53-333)||(26259743-26260023)
chr7 (53-220)||(26207392-26207559)
chr7 (232-322)||(26082585-26082675)
chr7 (232-322)||(26106372-26106462)
chr7 (102-333)||(26226814-26227045)
chr7 (20-71)||(26301902-26301953)
[»] chr4 (1 HSPs)
chr4 (20-304)||(44903123-44903407)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 26191422 - 26191109
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26191422 atgaggaaaactaggaatagtaaatttctgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 26191323  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26191322 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccactgtccaaggatacatcatatcagtgactatacaatctggttgaagat 26191223  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26191222 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 26191123  T
Q  320 atctggaacaccaa 333  Q
    |||||||| |||||    
T  26191122 atctggaagaccaa 26191109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 26204051 - 26203744
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||  ||||||||| |||||||||||||||||||||||||||| ||||| ||  | | |||||     |||||  ||||||||||     
T  26204051 atgaggcaaacaaggaacggtaaatttctgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagctcgcacaattggagaagtag 26203952  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||  |||||||||| | ||||||||||||||||||||    
T  26203951 cttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagat 26203852  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    ||| ||||||||  |||||  ||||| ||||||||  ||||||  |    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26203851 cttgaaacagaatttcaatttgatcttgaagcatcattattccttgagctattttaccaagaatttctgaggaagttccatctttgagattttcaacacc 26203752  T
Q  320 atctggaa 327  Q
    ||||||||    
T  26203751 atctggaa 26203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 26242554 - 26242287
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||| ||||||||| ||||||||||||||||||||| ||| ||  |||||||  | | ||||| ||   |||||  |||||||||     
T  26242554 atgaggtaaacaaggaattgtaaatttctgtgtatcagaaactaaattataatggggtttatattttctaacaaaataaattccacagtcggagaagtag 26242455  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26242454 cttgagctgcaaaagtgaatccttggaatatttagttttgcagctgattccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 26242355  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttct 287  Q
    ||||||||||||| ||||  | ||||   |||||| ||| ||||||  ||| ||||||||| ||||||    
T  26242354 ctttaaacagaacttcaaaagaatctttgagcatccatactccacgagtgactttactaagcatttct 26242287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 19103537 - 19103850
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||  ||||||||| | ||||||||||||||||||| |||||| ||||| |||||||||||||| ||  ||||| ||||||||||     
T  19103537 atgaggcaaaccaggaaccgtaaatttctgcgtatcagaaactaaattattatgaggtctatacttcatgataaaatggaaaacacagttggagaagtag 19103636  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||| ||||||| ||||||||   |||||||||||||||||| || ||||||| |||||||  |||||| ||||||||||||||| ||||||    
T  19103637 cttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgacggtccaagcatacatctgatcagtaactatacaatctggtcgaagat 19103736  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    | | |||||||  ||| || |||||| | |||||| ||||||||| | ||||||||| ||| |||||    || |||||||||||||  |||||||||||    
T  19103737 cgtgaaacagattctcgataggatcttggagcatcaatattccactgctgattttaccaagcatttcaagtgaagttccatctttgatgttttcaacacc 19103836  T
Q  320 atctggaacaccaa 333  Q
    |||||||| |||||    
T  19103837 atctggaagaccaa 19103850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 26128724 - 26128422
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||| ||||||||| ||||||||||||||||||||||||  || ||||| ||||||||||||||    |||||| ||||||||||     
T  26128724 atgaggcaaaccaggaattgtaaatttctgtgtatcagaaactaaattatcatttggtctatacttcatgataaaatgttctgcacagttggagaagtag 26128625  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| | | | ||||| ||||||||   |||||||||||||||||| || |||||||||  ||||||||| || ||||||||||| |||||||| |    
T  26128624 cttgagctgttataatgaattcttggaatacctagttttgcagctgcttcgaccgtccaaggaagcatcatatctgtcactatacaatcaggttgaaggt 26128525  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    ||| ||||| | ||||| | |||||| ||||||| ||||||||| ||  |||||||| || ||||||||  || ||||||||||| |  |||||||||||    
T  26128524 cttgaaacaaagcctcagttggatcttgaagcattgatattccaaggccgattttaccaataatttctgttgaagttccatctttcatgttttcaacacc 26128425  T
Q  320 atc 322  Q
    |||    
T  26128424 atc 26128422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 26155360 - 26155058
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||| ||||||||  |||||||||||||||||||||||||||| ||||| |||||||| ||||||   |||||  ||||||||||     
T  26155360 atgaggcaaaccaggaattgtaaatttgtgtgtatcagaaactaaattatcatgaggtctatacttcatgatcaaatgagcagcacaattggagaagtag 26155261  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||| | ||||| ||||||||   |||| ||||||||||||| || ||||||||| |||||||||| || ||||||||||| |||||||| |    
T  26155260 cttgagctgtaataatgaattcttggaatacctagtcttgcagctgcttcgaccgtccaaggaaacatcatatctgtcactatacaatcaggttgaaggt 26155161  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    ||| ||||| | |||||||||||||| | ||||| ||||||||| ||  ||||||||  || |||||  | || ||||||||||| |  |||||||||||    
T  26155160 cttgaaacaaagcctcaatcggatcttggagcatggatattccaaggccgattttacctagtatttcaaatgaagttccatctttcatgttttcaacacc 26155061  T
Q  320 atc 322  Q
    |||    
T  26155060 atc 26155058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 26223689 - 26223387
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||  | | |||||     |||||  ||||||||||     
T  26223689 atgaggcaaacaaggaacagtaaatttctgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtag 26223590  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||  ||||||| || | ||||||||||||||||||||    
T  26223589 cttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatccgttattatacaatctggttgaagat 26223490  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacacc 319  Q
    ||| ||||||||  |||||  ||||| ||||||||  ||||||| |    ||||| | ||||||||||  ||  |||||||||||||  ||||||| |||    
T  26223489 cttgaaacagaatttcaatttgatcttgaagcatcattattccatgagaaattttcccaagaatttctctggtagttccatctttgatgttttcaatacc 26223390  T
Q  320 atc 322  Q
    |||    
T  26223389 atc 26223387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 26251002 - 26250736
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||| ||||||||| ||||||||||||||||||||| ||| ||  |||||||  | | ||||| ||  |||||   |||||||||     
T  26251002 atgaggtaaacaaggaattgtaaatttctgtgtatcagaaactaaattataatggggtttatattttctaacaaaataaattgcacattcggagaagtag 26250903  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| || |||||||||||||||||||| |    
T  26250902 cttgagctgcaaaagtaaatccttggaatgtttagttttgcagctgattctacagtccaaggatacttcatatctgtcactatacaatctggttgaagtt 26250803  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttc 286  Q
    ||| ||| | ||| ||||| | |||||  |||||| ||| ||||||  ||| ||||||||| |||||    
T  26250802 cttgaaataaaacttcaatagaatctctgagcatccatactccacgagtgactttactaagcatttc 26250736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 26179240 - 26179017
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||  || ||||| |||||||| ||||||    ||||  ||||||||||     
T  26179240 atgaggaaaacaaggaattgtaaatttctgtgtatcagaaactaaattatcatttggtctatacttcatgatcaaatgagcaacacaattggagaagtag 26179141  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||| | ||||| ||||||||   ||||||||||||||||||||| ||||| ||||||  |||||||||||| |||||||| ||||||||||    
T  26179140 cttgagctgtaataatgaattcttggaatacctagttttgcagctgcttccactgtccacggatacgacatatcagtgacaatacaatcaggttgaagat 26179041  T
Q  220 ctttaaacagaacctcaatcggat 243  Q
    ||| ||||| || |||||| ||||    
T  26179040 cttgaaacaaaatctcaattggat 26179017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 26297602 - 26297384
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||| ||||||||| |||| |||||||||||||||| ||| ||  |||||||  | | ||||| ||  |||||   |||||||||     
T  26297602 atgaggtaaacaaggaattgtaaatttctgtgtttcagaaactaaattataatggggtttatattttctaacaaaataaattgcacaataggagaagtag 26297503  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||  ||||||| || |||||||||||||||||||| |    
T  26297502 cttgagctgtaaaagtcaatccttggaatgtttagttttgcagctgattccacagtccaagggtatttcatatctgtcactatacaatctggttgaagtt 26297403  T
Q  220 ctttaaacagaacctcaat 238  Q
    ||||||| ||||| |||||    
T  26297402 ctttaaatagaacttcaat 26297384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 322
Target Start/End: Complemental strand, 26301895 - 26301666
Alignment:
Q  93 aaatgaaaggcacagctggagaagtaacttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatat 192  Q
    ||||| ||||||||| |||||||||| |||||||| |||||||  ||||| |||||||| ||||||| ||||| ||| || ||||||||||||| |||||    
T  26301895 aaatggaaggcacagttggagaagtagcttgagctgtaaaagtacatcctcggaatgttcagttttgaagctgattcaactgtccaaggatacagcatat 26301796  T
Q  193 cagtgactatacaatctggttgaagatctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgagga 292  Q
    | ||||||||||||||||||||||| |||| ||||| |||||| || | |||| | ||||||| ||| | |||| ||||||||| ||| |||||    ||    
T  26301795 cggtgactatacaatctggttgaagttcttgaaacaaaacctcgattgaatcttggagcatcggtatccgacggctgattttaccaagtatttcaagtga 26301696  T
Q  293 tgttccatctttgagattttcaacaccatc 322  Q
     |||||||| ||||  ||||||||||||||    
T  26301695 agttccatcattgaagttttcaacaccatc 26301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 26087939 - 26087753
Alignment:
Q  19 aatgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagta 118  Q
    ||||||| || | ||||| |||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||    |||||| ||||||||||    
T  26087939 aatgagggaatccaggaacagtaaatttctgtgtatcagaaaccaaattatcatgaggtctatacttcatgataaaatgttctgcacagttggagaagta 26087840  T
Q  119 acttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactataca 205  Q
     |||||||| ||| ||||||| ||||||||   |||||||||||||||||| || ||||||||| |||||||||  || ||||||||    
T  26087839 gcttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgaccgtccaaggaaacatcatatttgtcactataca 26087753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 26111727 - 26111541
Alignment:
Q  19 aatgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagta 118  Q
    ||||||| || | ||||| |||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||    |||||| ||||||||||    
T  26111727 aatgagggaatccaggaacagtaaatttctgtgtatcagaaaccaaattatcatgaggtctatacttcatgataaaatgttctgcacagttggagaagta 26111628  T
Q  119 acttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactataca 205  Q
     |||||||| ||| ||||||| ||||||||   |||||||||||||||||| || ||||||||| |||||||||  || ||||||||    
T  26111627 gcttgagctgtaatagtgaattcttggaatacctagttttgcagctgcttcgaccgtccaaggaaacatcatatttgtcactataca 26111541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 333
Target Start/End: Complemental strand, 26260023 - 26259743
Alignment:
Q  53 atcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaacttgagctataaaagtgaatccttggaatgttt 152  Q
    ||||||||||||||| ||||||||| |||| ||  |||||||||||     |||||| || ||||| |||||||| ||| |||  ||||||||||         
T  26260023 atcagaaactaaattctcatgaggcttatactttctgataaaatgagcacaacagctagaaaagtagcttgagctgtaatagtagatccttggaacaccg 26259924  T
Q  153 agttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagatctttaaacagaacctcaatcggatctcgaagca 252  Q
    ||||| || |||| ||| || ||||||||||| | |||||||| |||||| ||||| ||||||||||||| ||||||||  |||||  ||||| ||||||    
T  26259923 agtttcgctgctgattcaactgtccaaggatagaacatatcagagactatgcaatcaggttgaagatcttgaaacagaatttcaatttgatcttgaagca 26259824  T
Q  253 tcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacaccatctggaacaccaa 333  Q
      || |||||| |   |||||||| ||| |||||| |||| |||||||||||||  ||||| ||||| ||||||| |||||    
T  26259823 atgaaattccatgaccgattttaccaagcatttctaaggaagttccatctttgatgttttcgacaccttctggaagaccaa 26259743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 26207559 - 26207392
Alignment:
Q  53 atcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaacttgagctataaaagtgaatccttggaatgttt 152  Q
    ||||||||||||||| ||||||||| | |  ||| ||||||| |||   ||||| || |||||||| |||||||| ||| ||| || ||||||||||       
T  26207559 atcagaaactaaattctcatgaggcttttgcttcttgataaagtgagctgcacaacttgagaagtagcttgagctgtaatagtaaagccttggaatgccg 26207460  T
Q  153 agttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagatc 220  Q
    ||||||||||||| |||||| ||||| ||||| | |||||| | |||||||||||||||||| |||||    
T  26207459 agttttgcagctgattccactgtccatggatataacatatctgagactatacaatctggttggagatc 26207392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 26082675 - 26082585
Alignment:
Q  232 cctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacaccatc 322  Q
    |||||||||||||| | ||||| | ||||||||||   |||||||||| ||||||||  || |||||||||||||| ||||||||||||||    
T  26082675 cctcaatcggatcttggagcatggctattccacgggcaattttactaataatttctgttgaagttccatctttgaggttttcaacaccatc 26082585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 26106462 - 26106372
Alignment:
Q  232 cctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatctttgagattttcaacaccatc 322  Q
    |||||||||||||| | ||||| | ||||||||||   |||||||||| ||||||||  || |||||||||||||| ||||||||||||||    
T  26106462 cctcaatcggatcttggagcatggctattccacgggcaattttactaataatttctgttgaagttccatctttgaggttttcaacaccatc 26106372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 26227045 - 26226814
Alignment:
Q  102 gcacagctggagaagtaacttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgacta 201  Q
    ||||| || |||||||| |||||||| ||| ||| || ||| ||||||    |||||||||||| || ||| ||||||||| | | |||||| | |||||    
T  26227045 gcacaacttgagaagtagcttgagctgtaatagtaaagcctaggaatgccgcgttttgcagctgattgcactgtccaaggaaataacatatctgagacta 26226946  T
Q  202 tacaatctggttgaagatctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatc 301  Q
    |||||||| |||| ||||| |  |||| || ||||||  ||||| | | | |||  |||||| |  ||||||||| ||| |||||   ||| ||  ||||    
T  26226945 tacaatcttgttggagatcatggaacaaaatctcaatttgatcttggatcttcgcaattccaagcatgattttaccaagcatttcacgggaagtggcatc 26226846  T
Q  302 tttgagattttcaacaccatctggaacaccaa 333  Q
    |||||  ||||||||||||||||||| |||||    
T  26226845 tttgatgttttcaacaccatctggaagaccaa 26226814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 26301953 - 26301902
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatca 71  Q
    |||||| |||| || ||||||||||||| ||||||||||||| |||||||||    
T  26301953 atgaggcaaaccagcaatagtaaatttctgtgtatcagaaaccaaattatca 26301902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 44903407 - 44903123
Alignment:
Q  20 atgaggaaaactaggaatagtaaatttccgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaa 119  Q
    |||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||| ||||| ||  | | ||||| | | |||||  ||||||||||     
T  44903407 atgaggcaaacaaggaatagtaaacttctgtgtatcagaaactaaatgatcatgaggtctatactttctaacaaaataacatgcacaattggagaagtag 44903308  T
Q  120 cttgagctataaaagtgaatccttggaatgtttagttttgcagctgcttccacagtccaaggatacatcatatcagtgactatacaatctggttgaagat 219  Q
    |||||||| ||| | | || ||| |||||| ||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  44903307 cttgagctgtaataataaagcctaggaatgcttagttttgcagctgattccacagtccaaggaatcatcatatcagttactatacaatctggttgaagat 44903208  T
Q  220 ctttaaacagaacctcaatcggatctcgaagcatcgatattccacggttgattttactaagaatttctgaggatgttccatcttt 304  Q
    ||| |||||  |||||||| |||||||  |||||  | |||||| |  ||||||||| ||| ||||||| |||||||||||||||    
T  44903207 cttgaaacattacctcaataggatctctgagcattaacattccatgactgattttaccaagcatttctggggatgttccatcttt 44903123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University