View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_26 (Length: 331)
Name: NF7824_high_26
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 35745610 - 35745280
Alignment:
| Q |
1 |
gaaagacaagacatgcagaagatgttggaagtctagcattacctatctatctgagatatcctaggcactattaattgatattatataagcacttgcaggg |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745610 |
gaaagacaagacatgcagaagatgttggaagcttagcattacctatctatctgagatatcctaggcactattaattgatattatataagcacttgcaggg |
35745511 |
T |
|
| Q |
101 |
actgaaagtgataaaaggctctagcacacctaagaagtctt------------------caaaggctcagagcaaagaaaatggagagtcaatggagtta |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745510 |
actgaaagtgataaaaggctctagcacacctaagaagtcttgcacacctaagaagtcttcaaaggctcagagcaaagaaaatggagagtcaatggagtta |
35745411 |
T |
|
| Q |
183 |
tcattcgtaggagcagaccaattgattttaatggtagagattcatacgaagatcatggcattcagagatatcatggacttagctccatgtaacagttctg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745410 |
tcattcgtaggagcagaccaattgattttaatggtagagattcatatgaagatcatggcattcagagatatcatggacttagctccatgtaacagttctg |
35745311 |
T |
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| Q |
283 |
cttccttgcgcgaggtatgtgacataataag |
313 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35745310 |
cttccttgcgcgaggtatgtgacataataag |
35745280 |
T |
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