View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_29 (Length: 320)
Name: NF7824_high_29
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 30431332 - 30431116
Alignment:
| Q |
86 |
tgcagacctaaaattgattcctttggtgaaacatgtagataagaaacaaagagatccaaaaccaaaccaaagggttgattttgttacatctctccacatg |
185 |
Q |
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| T |
30431332 |
tgcagacctaaaattgattcctttggtgaaacatgtagataagaaacaaagagatccaaaaccaaaccaaagggttgattttgttacatctttccacatg |
30431233 |
T |
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| Q |
186 |
attaattcagtgatcaacattccaatgcgatccaaatcacctccattctcttctccagcttctaaacaccaaagtaacaaacaaacatcaataatcacat |
285 |
Q |
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| T |
30431232 |
attaattcagtgatcaacattccaatgcgatccaaatcacctccattctcttcaccagcttctaaacaccaaagtaacaaacaaacatcaataatcacat |
30431133 |
T |
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| Q |
286 |
caaataaatacataaac |
302 |
Q |
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| T |
30431132 |
caaataaatacataaac |
30431116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30431417 - 30431372
Alignment:
| Q |
1 |
gaaacaacaaacacaataacatctcagaatttccagaatacataac |
46 |
Q |
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| T |
30431417 |
gaaacaacaaacacaataacatctcagaatttccagaatacataac |
30431372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 38774704 - 38774637
Alignment:
| Q |
117 |
catgtagataagaaacaaagagatccaaaaccaaaccaaagggttgattttgttacatctctccacat |
184 |
Q |
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| T |
38774704 |
catgaagataaaagacaaatacatccaagtccaaaccaaagcgttgattttgttacatctttccacat |
38774637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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