View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_high_6 (Length: 562)
Name: NF7824_high_6
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 249 - 545
Target Start/End: Complemental strand, 7691088 - 7690789
Alignment:
| Q |
249 |
tttgagatattttttagtataagataaagagaataattttaatcaatcaaattataattattg--atattttaaaaactaacttataaaaggggaaatta |
346 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7691088 |
tttgaaatattttttagtagaagataaagagaataattttaatcaatcaaattataattattgtgatattttaaaaactaacttataaaaggggaaatta |
7690989 |
T |
|
| Q |
347 |
tgaaataaatttattgtatttgttggtctatataacaagatagattacg-tgttaaagggatgaatagcgtttaacaaaaattattgaaggttgggggaa |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7690988 |
tgaaataaatttattgtatttgttggtctatttgataagatagattacgatgttaaagggatgaatagcgtttaacaaaaattattgaaggttgggggaa |
7690889 |
T |
|
| Q |
446 |
ttccgttacggtacaaatttccccgcttattcatgttggtcgtgcaccatgatataacggtggtggatatgtggaggttaggatggtcggatgggggagg |
545 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7690888 |
ttccgttacggtacaaattcccccgcttattcatgttggtcgtgcaccatgatataacggtggtggatatgtggaggttaggatggtcggatgggggagg |
7690789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 7691337 - 7691175
Alignment:
| Q |
1 |
cttacttaatggtggtccacatcagactactatataggattttattgctccatataatatgttacacttaatctatatgaccacgta----ataatagta |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7691337 |
cttacttaatggtggtccacatcagactaccatataggattttattgctccatata---tgttacacttaatctatatgaccacgtacgtaataatagta |
7691241 |
T |
|
| Q |
97 |
aggtacgtggtctttctaatatggatttcttaaattggttcatatatagacccttattatattagt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7691240 |
aggtacgtggtctttctaatatggatttcttaaattggttcatatatagacccttattatgttagt |
7691175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University