View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_14 (Length: 428)
Name: NF7824_low_14
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 43755087 - 43755485
Alignment:
| Q |
14 |
agagttggaagaaaacagaaggtgagaggaggagacattgaactgaatggcgttgtttcgtgtcaaaccaaccaccactcttcctcgtctttcttcaaca |
113 |
Q |
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| T |
43755087 |
agagttggaagaaaacagaaggtgagaggaggagacattgaactgaatggcgttgtttcgtgtcaaaccaaccaccactcttcctcgtctttcttcaaca |
43755186 |
T |
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| Q |
114 |
atttcccttcgaaccaaattcgtagttcggagctgcaaccttcagttccaaagtcaacccaatgactcccaaaaggttcttctttctttcactcttttca |
213 |
Q |
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| T |
43755187 |
atttcccttcgaaccaaattcgtagttcggagctgcaaccttcagttccaaagtcaacccaatgactcccaaaaggttcttctttctttcactcttttca |
43755286 |
T |
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| Q |
214 |
atgattcatttcattcctatgccaaaaacaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattatattt |
313 |
Q |
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| T |
43755287 |
atgattcatttaattcctatgccaaaaacaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattattttt |
43755386 |
T |
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| Q |
314 |
cttgaaaattttgcagttagttctggaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaatggtagggatgacgaagatat |
412 |
Q |
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| T |
43755387 |
cttgaaaattttgcagttagttctggaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaatggtagggatgacgaagatat |
43755485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 241 - 412
Target Start/End: Original strand, 43759969 - 43760142
Alignment:
| Q |
241 |
acaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattatatttcttga--aaattttgcagttagttctg |
338 |
Q |
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| T |
43759969 |
acaattattcaacttacggagtgaaactctcttaacatctaaaagggtatatcaaaatgtgattacttttttgtttgttcatattttttagttaattctg |
43760068 |
T |
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| Q |
339 |
gaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaatggtagggatgacgaagatat |
412 |
Q |
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| T |
43760069 |
gaagtgaaggacaagcttgaaaaagaatattatagtcttcccgttggtagaaatggtagggatgatgaagatat |
43760142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 43759825 - 43759953
Alignment:
| Q |
85 |
ccaccactcttcctcgtctttcttcaacaatttcccttcgaaccaaattcgtagttcggagc---tgcaaccttcagttccaaagtcaacccaatgactc |
181 |
Q |
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| T |
43759825 |
ccaccactcttcctcgccttgcttcatcactttcccttggaaccaaatttgtggttcgaagctcttctaaccttcaactccaaatgcagcccaatgactc |
43759924 |
T |
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| Q |
182 |
ccaaaaggttcttctttctttcactcttt |
210 |
Q |
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| T |
43759925 |
acgcaaggttcctccttctttcactcttt |
43759953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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