View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_low_15 (Length: 408)

Name: NF7824_low_15
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_low_15
NF7824_low_15
[»] chr8 (4 HSPs)
chr8 (18-192)||(30636017-30636191)
chr8 (236-318)||(17944794-17944876)
chr8 (237-323)||(35348672-35348758)
chr8 (241-295)||(42432035-42432089)
[»] chr2 (7 HSPs)
chr2 (132-336)||(30398336-30398537)
chr2 (199-316)||(30398217-30398334)
chr2 (236-315)||(19004811-19004890)
chr2 (243-318)||(303419-303494)
chr2 (258-318)||(304309-304369)
chr2 (241-300)||(42807475-42807534)
chr2 (243-291)||(42808584-42808632)
[»] chr1 (6 HSPs)
chr1 (236-318)||(24313835-24313917)
chr1 (240-318)||(52690167-52690245)
chr1 (241-289)||(40198815-40198864)
chr1 (277-318)||(40198872-40198913)
chr1 (277-318)||(40198945-40198986)
chr1 (241-310)||(52689582-52689651)
[»] chr5 (7 HSPs)
chr5 (241-318)||(32804857-32804934)
chr5 (241-295)||(25868496-25868550)
chr5 (241-315)||(7732819-7732893)
chr5 (241-295)||(25868116-25868170)
chr5 (241-287)||(25994943-25994989)
chr5 (241-274)||(6408650-6408683)
chr5 (241-290)||(26093034-26093083)
[»] chr6 (4 HSPs)
chr6 (236-318)||(1860381-1860463)
chr6 (236-287)||(31778832-31778883)
chr6 (236-270)||(30746518-30746552)
chr6 (237-318)||(12488514-12488595)
[»] chr4 (3 HSPs)
chr4 (234-282)||(4675035-4675083)
chr4 (251-316)||(40277043-40277108)
chr4 (236-268)||(26251483-26251515)
[»] chr7 (5 HSPs)
chr7 (236-318)||(36653697-36653779)
chr7 (340-381)||(49092700-49092741)
chr7 (237-317)||(35595231-35595311)
chr7 (236-288)||(42629200-42629252)
chr7 (241-295)||(16488170-16488224)
[»] chr3 (2 HSPs)
chr3 (241-273)||(4041047-4041079)
chr3 (258-318)||(33842976-33843036)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 30636017 - 30636191
Alignment:
Q  18 atttttgtgttttaaaaaacttggggagataacttctgaaagctatttttcagaataaagagcaaataaaaagccaaaagaacaacaatcattcgaccga 117  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |    
T  30636017 atttttgtgttttaagaaacttcgggagataacttctgaaagcaatttttcagaataaagagcaaataaaaagccaaaagaacaacgatcatttgaccaa 30636116  T
Q  118 cgtgctcctctccatttgaattttgttctttcccctacacaaaacactggtaccctgcagccatgcttaaaaaga 192  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  30636117 cgtgctcctctccgtttgaattttgctctttcccctgcacaaaacactcgtaccatgcagccatgcctaaaaaga 30636191  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 17944876 - 17944794
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||||||||||||| |||| |||||| ||||||||| | |||||| |||||||||||| ||||||| ||||||||||||||    
T  17944876 cttaattttacacatgtgtgacttaagtaacgctgcatgagttaactcacgcaggtgttataccccgcgtgagttaactcacg 17944794  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 35348672 - 35348758
Alignment:
Q  237 ttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacgtcagt 323  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||| || ||| ||||| | |||   |||||||||||||| ||||    
T  35348672 ttaattttatacatgcgtgacttaagtcacgctgcatgaattaactcacacagatgttatatcccatgtgagttaactcacgccagt 35348758  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 42432089 - 42432035
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgtta 295  Q
    ||||||| ||||||||||||||||||||| ||| | |||||| ||||||||||||    
T  42432089 ttttacatatgcgtgatttaagtcacgctacatgagttaactcacgcaggtgtta 42432035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 132 - 336
Target Start/End: Complemental strand, 30398537 - 30398336
Alignment:
Q  132 tttgaattttgttctttcccctacacaaaacactggtaccctgcagccatgcttaaaaagattttaggtgagttaaattacgctgcgttacttaactcat 231  Q
    ||||||||||| |||| ||||| ||||||||| | |  |||||| ||||||||||||| ||   |  ||||||||| | | | ||||| ||||||||||     
T  30398537 tttgaattttgctctt-cccctgcacaaaacattcgcgccctgctgccatgcttaaaatgaccctgcgtgagttaagtcatgttgcgtgacttaactcac 30398439  T
Q  232 acaccttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacgtcagtacagttta 331  Q
    |||||||||||||| |||||||||| ||||||||||  |||| | |||||| |||||||||||||| ||||| |||||||||||||   ||||||||||     
T  30398438 acaccttaattttatacatgcgtgacttaagtcacg--gcatgagttaactcacgcaggtgttacatcccgcgtgagttaactcaccctagtacagtttg 30398341  T
Q  332 aaatg 336  Q
    |||||    
T  30398340 aaatg 30398336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 30398217 - 30398334
Alignment:
Q  199 gtgagttaaattacgctgcgttacttaactcatacaccttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacac 298  Q
    ||||||||| | ||| ||||| |||||||||| ||||||||||||||||  |||| || |||||||| || |||| | |||||| |||||||||||||||    
T  30398217 gtgagttaagtcacgatgcgtgacttaactcacacaccttaattttacatgtgcgcgacttaagtcatgccgcatgagttaactcacgcaggtgttacac 30398316  T
Q  299 cccgcatgagttaactca 316  Q
    ||||||||||||||||||    
T  30398317 cccgcatgagttaactca 30398334  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 19004811 - 19004890
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactc 315  Q
    ||||||||||||||||||||| ||||||||||| |||| | |||||| |||||||||||||||||||| | |||||||||    
T  19004811 cttaattttacacatgcgtgacttaagtcacgccgcatgagttaactcacgcaggtgttacaccccgcgtaagttaactc 19004890  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 303419 - 303494
Alignment:
Q  243 ttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||||| |||| ||||||||||| |||| |||||||| |||||||||||| ||||| | ||||||||||||||    
T  303419 ttacacatgtgtgacttaagtcacgccgcatgaattaactcacgcaggtgttataccccacgtgagttaactcacg 303494  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 304369 - 304309
Alignment:
Q  258 ttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||||||||||||| | |||||| ||||||||||||||||| || ||||||||| ||||    
T  304369 ttaagtcacgctgcatgagttaactcacgcaggtgttacaccctgcgtgagttaacgcacg 304309  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 42807475 - 42807534
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccc 300  Q
    |||||||||| ||||| ||||||||||| |||| | |||||| ||||| |||||||||||    
T  42807475 ttttacacatacgtgacttaagtcacgccgcatgagttaactcacgcaagtgttacaccc 42807534  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 42808632 - 42808584
Alignment:
Q  243 ttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggt 291  Q
    |||||||||||||| ||||||||||| |||| | |||||| ||||||||    
T  42808632 ttacacatgcgtgacttaagtcacgcagcattagttaactgacgcaggt 42808584  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 24313835 - 24313917
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||||||||||||||| | |||| |||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||    
T  24313835 cttaattttacacatgcgtaacttaaatcacgccgcataaattaactcatgcaggtgttatatcccgcatgagttaactcacg 24313917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 52690245 - 52690167
Alignment:
Q  240 attttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||||||||| |||| ||||||||||   ||| | |||||| |||||||||||||||||||  ||||||||||||||    
T  52690245 attttacacatgtgtgacttaagtcacgtcacatgagttaactcacgcaggtgttacaccccgggtgagttaactcacg 52690167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 40198815 - 40198864
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcat-aaattaacttacgcag 289  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||    
T  40198815 ttttacacatgcgtgacttaagtcacgctgcatgaatttaacttacgcag 40198864  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 40198872 - 40198913
Alignment:
Q  277 ttaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||| |||||||||||||||||||  ||||||||||||||    
T  40198872 ttaactcacgcaggtgttacaccccgagtgagttaactcacg 40198913  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 40198945 - 40198986
Alignment:
Q  277 ttaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||| |||||||||||||||||||  ||||||||||||||    
T  40198945 ttaactcacgcaggtgttacaccccgagtgagttaactcacg 40198986  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 52689582 - 52689651
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagtt 310  Q
    ||||||||||| || | |||| |||| | |||| | |||||| |||||||||||||||||||| ||||||    
T  52689582 ttttacacatgtgtaacttaaatcacaccgcatgagttaactcacgcaggtgttacaccccgcgtgagtt 52689651  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 32804934 - 32804857
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||||||| |||| ||||||||||| || | | |||||| |||||| ||||||||||||| ||||||||||||||    
T  32804934 ttttacacatgtgtgacttaagtcacgccgcgtgagttaactcacgcagatgttacaccccgcgtgagttaactcacg 32804857  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 25868550 - 25868496
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgtta 295  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||    
T  25868550 ttttacacatgcgtgacttaagtcacgctgcataagttaactcacgcatgtgtta 25868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 7732893 - 7732819
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactc 315  Q
    |||||||||||||||| |||||||||||  ||| | |||||| ||| |||||||| ||||||  |||||||||||    
T  7732893 ttttacacatgcgtgacttaagtcacgccacatgagttaactcacgtaggtgttataccccgggtgagttaactc 7732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 25868116 - 25868170
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgtta 295  Q
    ||||||||||| |||| |||||||||||||||| | |||||| ||||| ||||||    
T  25868116 ttttacacatgtgtgacttaagtcacgctgcatgagttaactcacgcatgtgtta 25868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 25994989 - 25994943
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgc 287  Q
    |||||||||||||||| |||||||||||||||| | |||||| ||||    
T  25994989 ttttacacatgcgtgacttaagtcacgctgcatgagttaactcacgc 25994943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 6408650 - 6408683
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcata 274  Q
    |||||||||||||||| |||||||||||||||||    
T  6408650 ttttacacatgcgtgacttaagtcacgctgcata 6408683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 26093083 - 26093034
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcagg 290  Q
    ||||||||||| |||| ||||||||||| | || ||||||||||||||||    
T  26093083 ttttacacatgtgtgacttaagtcacgccgtatgaattaacttacgcagg 26093034  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 1860381 - 1860463
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||||||||||||||||| |||||||||||  ||||| |||||| ||||||||  || |||| |  ||||||||||||||    
T  1860381 cttaattttacacatgcgtgacttaagtcacgcaacataagttaactcacgcaggttataaacccagtgtgagttaactcacg 1860463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 31778832 - 31778883
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgc 287  Q
    ||||||||||||||||||||| ||||||||||| |||| | |||||| ||||    
T  31778832 cttaattttacacatgcgtgacttaagtcacgccgcatgagttaactcacgc 31778883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 30746552 - 30746518
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctg 270  Q
    ||||||||||||||||||||| |||||||||||||    
T  30746552 cttaattttacacatgcgtgacttaagtcacgctg 30746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 12488514 - 12488595
Alignment:
Q  237 ttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||| |||||||| ||| |||| | | |||||||||||||||| | ||| |||||| ||| | | ||||||||||||||    
T  12488514 ttaatttcacacatgcatgacttaaataatgctgcataaattaactcatgcaagtgttatacctcccgtgagttaactcacg 12488595  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 4675035 - 4675083
Alignment:
Q  234 accttaattttacacatgcgtgatttaagtcacgctgcataaattaact 282  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  4675035 accttatttttacacatgcgtgacttaagtcacgctgcatgaattaact 4675083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 40277108 - 40277043
Alignment:
Q  251 gcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactca 316  Q
    |||||| ||||||||||| || | | |||||| |||||| ||||||||||| | ||||||||||||    
T  40277108 gcgtgagttaagtcacgccgcgtgagttaactcacgcagatgttacaccccacgtgagttaactca 40277043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 26251483 - 26251515
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgc 268  Q
    ||||||||||||||||||||| |||||||||||    
T  26251483 cttaattttacacatgcgtgacttaagtcacgc 26251515  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 36653779 - 36653697
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    |||||||||| | |||||||| |||||||||||||||  | |||||| | |||||||||| | || || ||||||||||||||    
T  36653779 cttaattttatatatgcgtgacttaagtcacgctgcaagagttaactcatgcaggtgttatatccagcgtgagttaactcacg 36653697  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 49092741 - 49092700
Alignment:
Q  340 agtttggtttgaaatgctgagccactcatttctttcatacgg 381  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  49092741 agtttggattgaaatgctaagccactcatttctttcatacgg 49092700  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 35595311 - 35595231
Alignment:
Q  237 ttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcac 317  Q
    ||||||||||| || || || ||||||||||| |||| | |||||| ||| |||||||| |||||  ||||||||||||||    
T  35595311 ttaattttacatatacgggacttaagtcacgccgcatgagttaactcacgtaggtgttataccccatatgagttaactcac 35595231  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 42629252 - 42629200
Alignment:
Q  236 cttaattttacacatgcgtgatttaagtcacgctgcataaattaacttacgca 288  Q
    ||||||||||||||||| ||| |||||||||||||||| | |||||| |||||    
T  42629252 cttaattttacacatgcatgacttaagtcacgctgcatgagttaactcacgca 42629200  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 16488224 - 16488170
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcataaattaacttacgcaggtgtta 295  Q
    ||||||||||| |||| |||||||||||||||| | |||| | ||||||||||||    
T  16488224 ttttacacatgtgtgacttaagtcacgctgcatgagttaattcacgcaggtgtta 16488170  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 4041079 - 4041047
Alignment:
Q  241 ttttacacatgcgtgatttaagtcacgctgcat 273  Q
    |||||||||||||||| ||||||||||||||||    
T  4041079 ttttacacatgcgtgacttaagtcacgctgcat 4041047  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 33843036 - 33842976
Alignment:
Q  258 ttaagtcacgctgcataaattaacttacgcaggtgttacaccccgcatgagttaactcacg 318  Q
    ||||||||||| |||| | |||||| ||||||||||||   ||||| ||||||||||||||    
T  33843036 ttaagtcacgccgcatgagttaactgacgcaggtgttattacccgcgtgagttaactcacg 33842976  T

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