View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_18 (Length: 388)
Name: NF7824_low_18
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 27814758 - 27815121
Alignment:
| Q |
1 |
catcttcctggaatttatttccattcaaatggtggctaacaaactctgtagaagccaaattgctttgtgtgtcacaccagctttattattgttggaaagc |
100 |
Q |
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| T |
27814758 |
catcttcctggaatttttttccattcaaatgttggctaacaaactctgtagaagccaaattgctttgtgtgtcacaccagctttat---tgttggaaagc |
27814854 |
T |
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| Q |
101 |
taagaagttgacctttcaaagccaaattcatctctcgccactttactgaaatgttgtgttttttattgattttgttttactgaaccatgttattccatct |
200 |
Q |
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| T |
27814855 |
taagaagttgacctttcgaagccaaattcatctctcgccactttactgaaatgttgtgctttttattgattttgttttactgaaccatgttattccatct |
27814954 |
T |
|
| Q |
201 |
ctagctcaaatggtggctaaccatgtttcacaatcaannnnnnnnncatctctagccaccatttaatttcattcatgaagaacaaagcctcccagagaac |
300 |
Q |
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| T |
27814955 |
ctagctcaaatggtggctaaccatgtttcacaatcaattttttttccatctctagccaccatttaatttcattcatgaagaacaaagcctcctagagaac |
27815054 |
T |
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| Q |
301 |
aaacccaaggctaatcgaatcataaattgttgaatcgaagcttatgcagttgcagcaatgaacatgt |
367 |
Q |
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| T |
27815055 |
aaacccaaggctaatcgaatcataaactgttgaatcgaagcttatgcagttgcagcaatgaacatgt |
27815121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 6171633 - 6171697
Alignment:
| Q |
301 |
aaacccaaggctaatcgaatcataaattgttgaatcgaagcttatgcagttgcagcaatgaacat |
365 |
Q |
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| T |
6171633 |
aaacccaaggttaatcgaatcataaactcttgaatcgaagcttatgttgttgcaacaatgaacat |
6171697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 12685544 - 12685496
Alignment:
| Q |
319 |
atcataaattgttgaatcgaagcttatgcagttgcagcaatgaacatgt |
367 |
Q |
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| T |
12685544 |
atcataaactctcgaatcgaagcttatgcagttgcagcaatgaacatgt |
12685496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 12685583 - 12685548
Alignment:
| Q |
262 |
tttaatttcattcatgaagaacaaagcctcccagag |
297 |
Q |
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| T |
12685583 |
tttaatttcattcatgaagaacaaagccttccagag |
12685548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 30786895 - 30786932
Alignment:
| Q |
330 |
ttgaatcgaagcttatgcagttgcagcaatgaacatgt |
367 |
Q |
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| T |
30786895 |
ttgaatcaaagcttatgcagttgcagcaatgaacatgt |
30786932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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