View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_21 (Length: 367)
Name: NF7824_low_21
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 6207048 - 6207394
Alignment:
| Q |
16 |
catttacaattaatgcattttgaaattgtgggaaaataaaacacaattacaacttattttagtgtgtacctgcaatgagaccattttatgggtttaacat |
115 |
Q |
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| T |
6207048 |
catttacaattaatgcattttgaaattgtgggaaaataaaacacaattacaacttattttagtgtgtacctgcaatgagaccattttatgggtttaacat |
6207147 |
T |
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| Q |
116 |
gaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggtcgatattactgacctgcaaatttcatttaagaagatt |
215 |
Q |
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| T |
6207148 |
gaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggtcgatattactgacctgcaaatttcatttaagaagatt |
6207247 |
T |
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| Q |
216 |
ttgtaattaactttatcgattaattttactaaacactttaaatattttaatcagatagtctatccgttgtttgctatagattcatctaccatcggctaac |
315 |
Q |
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| T |
6207248 |
ttgtaattaactttatcgattaattttactaaacactttaaatattttaatcagatagtctatccgttatttgctatagattcatctaccatcggctaac |
6207347 |
T |
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| Q |
316 |
aaaatgagctattttttatcaaacagaatgtaagcagaataatctac |
362 |
Q |
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| T |
6207348 |
aaaatgagctattttttatcaaacagaatgtaagcagactaatctac |
6207394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 6214771 - 6214918
Alignment:
| Q |
79 |
gtgtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggt |
178 |
Q |
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| T |
6214771 |
gtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggt |
6214870 |
T |
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| Q |
179 |
cgatattactgacctgcaaatttcatttaagaag-attttgtaattaa |
225 |
Q |
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| T |
6214871 |
cgacattactgacctgcaaatttcatttaagaagaattttgtaattaa |
6214918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 6177301 - 6177401
Alignment:
| Q |
79 |
gtgtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggt |
178 |
Q |
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| T |
6177301 |
gtgtacctgcaagaagaccattttgtgggtttaacatgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagggt |
6177400 |
T |
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| Q |
179 |
c |
179 |
Q |
| |
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| |
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| T |
6177401 |
c |
6177401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 6214942 - 6215030
Alignment:
| Q |
224 |
aactttatcgattaattttactaaacactttaaatattttaatcagatagtctatccgttgtttgctatagattcatctaccatcggctaac |
315 |
Q |
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|||||||| | ||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| |||||| |||||| |||||| |
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| T |
6214942 |
aactttattgtttaattttatccaacactttaaat---ttaatcagatagtctatccgttatttgttataggttcatcaaccatcagctaac |
6215030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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