View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_low_22 (Length: 350)
Name: NF7824_low_22
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 26457276 - 26457598
Alignment:
| Q |
1 |
tttgaaggttcttgcccttctgctgctgtgattttttgactctattttccgttcatgtttgcataattgacatcgactgtgttttacgtgataggccgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26457276 |
tttgaaggttcttgcccttctgctgctgtgattttttgactctactttacgttcatgtttgcataattgacatcgactgtgttttacgtgataggccgcg |
26457375 |
T |
|
| Q |
101 |
gagtctttatcatccattgaaattgaaactctcttatggggtaactcaggtgatcaaattgtgaaagatttttgttcgtccgctattctgacactgcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26457376 |
gagtctttatcatccattgaaattgaaactctcttatggggtaactcaggtgatcaaattgtgaaagatttttgttcgtccgctattctgacactgcaaa |
26457475 |
T |
|
| Q |
201 |
gttacataccatctggtaataattctacaatcttgagaaaatacatgatatttcaatttaatcttttgtttgcattcttttattgattctagaaagtgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26457476 |
gttacataccatctggtaataattctacaatcttgagaaaatacatgatatttcaatttaatcttttgtttgcattcttttattgattctagaaagtgtc |
26457575 |
T |
|
| Q |
301 |
ttcttaatcagatcctcagtgga |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26457576 |
ttcttaatcagatcctcagtgga |
26457598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 29675978 - 29676316
Alignment:
| Q |
1 |
tttgaaggttcttgcccttctgctgctgtgattttttgactctattttccgttcatgtttgcataattgacatcgactgtgttttacgtgataggccgcg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29675978 |
tttgaaggttcttgcccttcttctgctgtgaatttttggctctattttatgttcatgtctgcataattgacatcgactgtgttttacgtgataggccgca |
29676077 |
T |
|
| Q |
101 |
gagtctttatcatccattgaaattgaaact----ctct-----tatg---gggtaactcaggtgatcaaattgtgaaagatttttgttcgtccgctattc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29676078 |
gagtctttatcatccattgaaattgaaacttggacactgcaaatatctttgggtaactcaggtgatcaaattgtgaaagatttttgttcgtctgctattc |
29676177 |
T |
|
| Q |
189 |
tgacactgcaaagttacataccatctggtaataattctacaatcttgagaaaatacatgatatttcaatttaatcttttgtttgcattcttttattgatt |
288 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
29676178 |
taacactgcaaagttacataccatctggtaataactctacaatcttgagaaaatacatgatatttcaatttaatattttgtttgcattcttttattaatt |
29676277 |
T |
|
| Q |
289 |
ctagaaagtgtcttcttaatcagatcctcagtggactat |
327 |
Q |
| |
|
||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
29676278 |
ctagaaaatggcttcttactcagatcctcagtggactat |
29676316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 11493241 - 11492915
Alignment:
| Q |
1 |
tttgaaggttcttgcccttctgctgctgtgattttttg----actctattttccgttcatgtttgcataattgacatcgactgtgttttacgtgataggc |
96 |
Q |
| |
|
||||||||||||||| |||||||| | |||| ||| || ||||||||| |||||||| ||| ||||||| ||| ||||| |||| ||||||||| |
|
|
| T |
11493241 |
tttgaaggttcttgctcttctgctacagtgactttatgtgtgactctatttat-gttcatgtctgcttaattgatatcaactgtttttt--gtgataggc |
11493145 |
T |
|
| Q |
97 |
cgcggagtctttatcatccattgaaattgaaactctcttatggggtaactcaggtgatcaaattgtgaaagatttttgttcgtccgctattctgacactg |
196 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||| | ||| |||| | |||| |||||||| |
|
|
| T |
11493144 |
tgcggagtccttatcttccattgaaattgaaacattcttatggggtatctctggggatcagattgttaaaaaatttagttcagctactatgatgacactg |
11493045 |
T |
|
| Q |
197 |
caaagttacataccatctggtaataattctacaatc-ttgagaaaatacatgatatttcaatttaatcttttgtttgcattcttttattgattctagaaa |
295 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | || ||||||||||||| |||| | || |||||||||||||||||||||||| ||| | ||| |
|
|
| T |
11493044 |
caaagttgcataccatctggtaataattctacaagcatttagaaaatacatgaaattttacttaaatcttttgtttgcattcttttataaatttttaaaa |
11492945 |
T |
|
| Q |
296 |
gtgtcttcttaatcagatcctcagtggactat |
327 |
Q |
| |
|
|| |||||| |||||||||| ||||||||| |
|
|
| T |
11492944 |
atg--ttcttactcagatcctcggtggactat |
11492915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University