View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_27 (Length: 328)
Name: NF7824_low_27
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 17345157 - 17344858
Alignment:
| Q |
3 |
caaaacaaaaacaaatttaccatgcactttcaattgaatatttttaatgcaaaataaatatatatccnnnnnnnnncctttgtgcaaagaaaagcagtca |
102 |
Q |
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| T |
17345157 |
caaaaccaaaaaaaatctaccatgcactttcaattgaatatttttaatgcaaaataaatatatatccttttttt--cctttgtgcaaagaaaagcagtca |
17345060 |
T |
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| Q |
103 |
ctggtaacacttttcttttaccttttgctttagaattagaacactgttactgttatgtaatgtcctaaagttattatataaagatgaataatgtcggtgc |
202 |
Q |
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| T |
17345059 |
ctggtaacacttttcttttaccttttgctttagaattagaacactgtta------tgtaatgtcctaaagttattatataaagatgaataatgtcggtgc |
17344966 |
T |
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| Q |
203 |
atcaaaggattctatcagatataatgtacacttttaagagcgtacgttaacagcattaaactgatcatattttgaattgaacacagctaagttattgatg |
302 |
Q |
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| T |
17344965 |
atcaaaggattctatcagatataatgtacacttttaagagcgtacgttgacagcattaaactgatcatattttgaattgaacacagctaagttattgatg |
17344866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 17139475 - 17139364
Alignment:
| Q |
85 |
tgcaaagaaaagcagtcactggtaacacttttcttttaccttttgctttagaattagaacactgttactgttatgtaatgtcctaaagttattatataaa |
184 |
Q |
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| T |
17139475 |
tgcaaagaaaaacagtaactgcctacacttttcttttactttttgctttagaattagaacac-----------tgtcatgtcctaaagttattatataaa |
17139387 |
T |
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| Q |
185 |
gatgaataatgtcggtgcatcaa |
207 |
Q |
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| T |
17139386 |
gatgagtaatgttggtgcatcaa |
17139364 |
T |
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