View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_28 (Length: 325)
Name: NF7824_low_28
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 13609759 - 13610051
Alignment:
| Q |
18 |
gggacttgttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggct |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609759 |
gggactggttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggct |
13609858 |
T |
|
| Q |
118 |
gcttgcctctacattgcctgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtg |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
13609859 |
gcttgcctctacattgcttgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatggagccacaaagaaggaaattggccgtg |
13609958 |
T |
|
| Q |
218 |
caaaagaatacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609959 |
caaaagaatacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgat |
13610051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 14074816 - 14075108
Alignment:
| Q |
18 |
gggacttgttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggct |
117 |
Q |
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|||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||| |
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| T |
14074816 |
gggactggttcccaccattaaggaccgagctaatgagatatataagcgggttgaagatcagaagtctagtaagggaagaaatcaggaagcattattggct |
14074915 |
T |
|
| Q |
118 |
gcttgcctctacattgcctgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtg |
217 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||| ||| | |
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| T |
14074916 |
gcttgcgtctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgattgccaatggagccaccaagaaggaaattgtccgcg |
14075015 |
T |
|
| Q |
218 |
caaaagaatacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgat |
310 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||| | |||||||||| ||||||| ||||||||||||| |||||| |
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| T |
14075016 |
caaaagaatacatagtgaaacaactgggtttagagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggacgat |
14075108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 14150227 - 14150528
Alignment:
| Q |
18 |
gggacttgttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggct |
117 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||||||||| |||| | ||||||||| ||||| || |||||| || ||||||||||||||| |
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| T |
14150227 |
gggactggttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggct |
14150326 |
T |
|
| Q |
118 |
gcttgcctctacattgcctgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtg |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||| | || |||||||||||||||||||||||| | |
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| T |
14150327 |
gcttgcctctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgctattggagccaccaagaaggaaattggccgcg |
14150426 |
T |
|
| Q |
218 |
caaaagaatacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgatattcttc |
317 |
Q |
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||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| || ||| |
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| T |
14150427 |
caaaacaatacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttc |
14150526 |
T |
|
| Q |
318 |
ga |
319 |
Q |
| |
|
|| |
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|
| T |
14150527 |
ga |
14150528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 36012786 - 36012655
Alignment:
| Q |
38 |
aggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcctg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
36012786 |
aggaccgagctaatgagatatataagcgggttgaagatcagaagtctagcaggggaagaaatcaggacgcattattggctgcttgcctctacattgcttg |
36012687 |
T |
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| Q |
138 |
tcgacaagaagacaagccacgcactgtaaagg |
169 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
36012686 |
tcgacaagaagacaagccacgcaccgtaaagg |
36012655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 36012561 - 36012427
Alignment:
| Q |
169 |
gaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtgaaacaacttggtttggagaatggtggtcaatctg |
268 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
36012561 |
gaaatttgctcaattgccaatggagccaccaagaaggaaattggccgcgcaaaagaatacatagtgaaacaactgggtttggagaatggcggtcaatctg |
36012462 |
T |
|
| Q |
269 |
tagaaatgggaacaattcatgctggggactttatg |
303 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |
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| T |
36012461 |
ttgaaatgggaacaattcatgctggggactttatg |
36012427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 22090788 - 22090700
Alignment:
| Q |
169 |
gaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtgaaacaacttggtttggagaatgg |
257 |
Q |
| |
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||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
22090788 |
gaaatttgctctgttgccaatggtgccacaaagaaggaaattggccgagcaaaagagtacatagtgaaacaacttggtttggataatgg |
22090700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 22091012 - 22090880
Alignment:
| Q |
37 |
aaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcct |
136 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||| |||| || ||||||||||| |||||||||||||| || || ||||||||||| ||||||| || | |
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| T |
22091012 |
aaggatcgagcaaatgagatatataagagggttgaagaccaaaagtctagtagaggaagaaatcaagatgctttgttggctgcttgtatctacatcgctt |
22090913 |
T |
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| Q |
137 |
gtcgacaagaagacaagccacgcactgtaaagg |
169 |
Q |
| |
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| ||||||||||| || ||| | |||||||||| |
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| T |
22090912 |
gccgacaagaagagaaaccaagaactgtaaagg |
22090880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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