View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_3 (Length: 659)
Name: NF7824_low_3
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 353 - 640
Target Start/End: Original strand, 33763564 - 33763851
Alignment:
| Q |
353 |
ctctacaatcctctctagctaattgcgtttgttgaaaaccctgcaattcttgcggatttctccttcatttccaaccaaaactccaactttccccatcttt |
452 |
Q |
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| T |
33763564 |
ctctacaatcctctctagctaattgcgtttgttgaaaaccctgcaattcttgcggatttctccttcatttccaaccaaaactccaactttccccatcttt |
33763663 |
T |
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| Q |
453 |
atcatagcggttgcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaa |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33763664 |
atcatagcggttgcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaa |
33763763 |
T |
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| Q |
553 |
tctgcattatacctctcttaagaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcacc |
640 |
Q |
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| T |
33763764 |
tctgcattatacctctcttaagaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcacc |
33763851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 33763232 - 33763494
Alignment:
| Q |
16 |
attataaatcaaataaccaaattaaggtcttcatttcaaaccaatagtagataatgtacctgtgaattttacgtttgagagaaatgaatttggaaatgtc |
115 |
Q |
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| T |
33763232 |
attataaatcaagtaaccaaa----ggtcttcgtttcaaaccaatagtagataatgcacctgtgaattttacgtttgagagaaatgaatttggaaatgtc |
33763327 |
T |
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| Q |
116 |
acatcaacattaaacaaccacatgaacactttttcaatagagttggatgaaaagagggtaatggtaccgatattttataacttacatgaacgatttgttt |
215 |
Q |
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| T |
33763328 |
acatcaacattaaacaaccaaatgaacactttttcaatagagttggatgaaaagagggtgatggtaccgatattttataacttacatgaacgatttgttt |
33763427 |
T |
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| Q |
216 |
tggnnnnnnnnctttaaagtactaaattcttacaaacatctaaaggaaaaataatactttcaataag |
282 |
Q |
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| T |
33763428 |
tggaaaaaaaactttaaagtactaaattcttacaaacatctaaaggaaaaataatactttcaataag |
33763494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 358 - 595
Target Start/End: Complemental strand, 33755484 - 33755247
Alignment:
| Q |
358 |
caatcctctctagctaattgcgtttgttgaaaaccctgcaattcttgcggatttctccttcatttccaaccaaaactccaactttccccatctttatcat |
457 |
Q |
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| T |
33755484 |
caatccactctagctagttgagtttattgacgaccttacaattcttcctaatttctccttcatttccacccaaaactccaattttccacatctttatcat |
33755385 |
T |
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| Q |
458 |
agcggttgcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgc |
557 |
Q |
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| T |
33755384 |
agcggttgcaaaacacttaacaaacttatcaccatttgaagtaaaattagacacaaaatgacttgttgatttatccaaagcaagttgcttatcaacctgc |
33755285 |
T |
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| Q |
558 |
attatacctctcttaagaagaatctgcttgtaaaattc |
595 |
Q |
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| T |
33755284 |
tatatacatctcttcagaagaatctgtttgtaaaattc |
33755247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 353 - 638
Target Start/End: Original strand, 33761508 - 33761797
Alignment:
| Q |
353 |
ctctacaatcctctctagctaattgcgtttg-ttgaaaaccctgcaat--tcttgcggatttctccttcatttccaaccaaaactccaactttcc-ccat |
448 |
Q |
| |
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|||| |||||| ||||||||||||| ||| ||||| ||||| |||| |||| || ||||||||||||||||| | ||||| |||| ||| |||| |
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| T |
33761508 |
ctcttcaatccactctagctaattgaattttattgaagaccctacaatattcttccgaatttctccttcatttcctaacaaaaatccattttttttccat |
33761607 |
T |
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| Q |
449 |
ctttatcatagcggttgcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctga |
548 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||| |
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| T |
33761608 |
ctttatcatagcagttgcaaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaaggacttgttgatttaaccaaagtaagtttctga |
33761707 |
T |
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| Q |
549 |
tcaatctgcattatacctctcttaagaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagca |
638 |
Q |
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| T |
33761708 |
tcgatctgcaatatacctctcttgagaagaaattgttggtaaaattcattatcaagaataaaagaagtcttctaatacaaaattgcagca |
33761797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 365 - 564
Target Start/End: Original strand, 33755559 - 33755758
Alignment:
| Q |
365 |
ctctagctaattgcgtttgttgaaaaccctgcaattcttgcggatttctccttcatttccaaccaaaactccaactttccccatctttatcatagcggtt |
464 |
Q |
| |
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||||||||||||| |||| ||||| ||||| || ||||| || | ||||||||||||||||| ||||| |||| ||| ||||||||||||||||| ||| |
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| T |
33755559 |
ctctagctaattgagtttattgaagaccctacagttcttccgaacttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagtt |
33755658 |
T |
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| Q |
465 |
gcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatac |
564 |
Q |
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| T |
33755659 |
gcaaaattattaacaaacttctcgccatttgaagcaaaattagacacaaaaagacttgttgatttatccaaagtaagtttttgatcgatctgcaatatac |
33755758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 640
Target Start/End: Original strand, 33758689 - 33758768
Alignment:
| Q |
561 |
atacctctcttaagaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcacc |
640 |
Q |
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||||||||||| |||||||| || ||||||| ||| | ||||| | |||||| ||||| ||||||||||||| |||||| |
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| T |
33758689 |
atacctctcttcagaagaatttgtttgtaaatttcttgatcaataacaaaagaggtattttgatccaaaaatgtagcacc |
33758768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 640
Target Start/End: Original strand, 33755790 - 33755823
Alignment:
| Q |
607 |
taaaagaagtattctgatccaaaaatgcagcacc |
640 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
33755790 |
taaaagaagtattctaatccaaaaatgcagcacc |
33755823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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