View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_31 (Length: 300)
Name: NF7824_low_31
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 123 - 282
Target Start/End: Complemental strand, 16046649 - 16046490
Alignment:
| Q |
123 |
aaaagagttaaagaatagagtgggagatagaatcactcacataagcatcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaattt |
222 |
Q |
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| T |
16046649 |
aaaagagttaaagaatagagtgggagatagaatcactcacataggtctcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaattt |
16046550 |
T |
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| Q |
223 |
agccattgtggtctggtttgtctttcactcttcctcttgtacatagtctctggttggggc |
282 |
Q |
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| T |
16046549 |
agccattgtggtctggtttgtctttcactcttgctcttgtacatagtctctggttggggc |
16046490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 129 - 278
Target Start/End: Original strand, 16006406 - 16006555
Alignment:
| Q |
129 |
gttaaagaatagagtgggagatagaatcactcacataagcatcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaatttagccat |
228 |
Q |
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| T |
16006406 |
gttaaagaatagagtgggagatagaatcactcacataggtctcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaatttagccat |
16006505 |
T |
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| Q |
229 |
tgtggtctggtttgtctttcactcttcctcttgtacatagtctctggttg |
278 |
Q |
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| T |
16006506 |
tgtggtctggtttgtctttcactcttgcccttgtacatagtctttggttg |
16006555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 16094884 - 16094808
Alignment:
| Q |
152 |
gaatcactcacataagcatcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaatttagccat |
228 |
Q |
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| T |
16094884 |
gaatcactcacatagacatcttgaatcacaaaagaagtgacaagcatgaaaagaaatgcacaaataagtttagccat |
16094808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 16099841 - 16099765
Alignment:
| Q |
152 |
gaatcactcacataagcatcttggatcacaaaagtgataacaagcatgaaaagaaatgcacaaatgaatttagccat |
228 |
Q |
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|||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||| | ||||||||| |
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| T |
16099841 |
gaatcactcacatagacatcttgaatcacaaaagaagtgacaagcatgaaaagaaatgcacaaacaagtttagccat |
16099765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 16046747 - 16046715
Alignment:
| Q |
10 |
ggtgttaatttaaggggaaaacaaataaatgaa |
42 |
Q |
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| T |
16046747 |
ggtgttaatttaaggggaaaacaaataaatgaa |
16046715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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