View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_low_34 (Length: 281)
Name: NF7824_low_34
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 23073447 - 23073190
Alignment:
| Q |
16 |
agaagcatactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcatacaattgttgcattcaaaaggaagatgagcagggtaggc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23073447 |
agaagcatactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcttacaattgttgcattcaaaaggaagatgagcagggtaggc |
23073348 |
T |
|
| Q |
116 |
ttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacccaaaattttgccaacaagggaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23073347 |
ttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacctaaaattttgccaacaagggaatt |
23073248 |
T |
|
| Q |
216 |
gcttaggtttcttcttgtgttacttttcaacaaacttaaaatagctactagttcttct |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23073247 |
gcttaggtttcttcttgtgttacttttcaacaaacttaaaatagctactagttcttct |
23073190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 23110914 - 23111132
Alignment:
| Q |
16 |
agaagcatactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcatacaattgttgcattcaaaaggaagatgagcagggtaggc |
115 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
23110914 |
agaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatgagcagggtaggc |
23111013 |
T |
|
| Q |
116 |
ttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacccaaaattttgccaacaagggaatt |
215 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
23111014 |
ttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttgccaacaaaggaaat |
23111113 |
T |
|
| Q |
216 |
gcttaggtttcttcttgtg |
234 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
23111114 |
acttaggtttctttttgtg |
23111132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 23078045 - 23077844
Alignment:
| Q |
26 |
tgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcatacaattgttgcattcaaaaggaagatgagcagggtaggcttggttttca |
125 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||| ||||| || || |||||| || |||||||||| |||| ||| |||||||| | |
|
|
| T |
23078045 |
tgaaattgaagtgtttagtaaggacgcaccacggcgccagagatgactcgtataactgttgccttaaaaaggaagacgagcgcggtgcagttggttttta |
23077946 |
T |
|
| Q |
126 |
tttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacccaaaattttgccaacaagggaattgcttaggttt |
225 |
Q |
| |
|
|||| |||||||||||| | |||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
23077945 |
tttatcgaaaactctcccgttggtagcaacaagagcttttgttgagaatttaagggtaatttcacccaaaattttgccaataagggaacttgttaggttt |
23077846 |
T |
|
| Q |
226 |
ct |
227 |
Q |
| |
|
|| |
|
|
| T |
23077845 |
ct |
23077844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University