View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_low_37 (Length: 250)

Name: NF7824_low_37
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_low_37
NF7824_low_37
[»] chr8 (8 HSPs)
chr8 (9-250)||(5195138-5195379)
chr8 (9-240)||(5198717-5198948)
chr8 (9-240)||(5177702-5177931)
chr8 (9-179)||(6231654-6231830)
chr8 (9-179)||(5185144-5185320)
chr8 (9-179)||(1795686-1795865)
chr8 (141-223)||(33861483-33861565)
chr8 (35-174)||(5207162-5207299)
[»] chr7 (1 HSPs)
chr7 (9-179)||(5178836-5179012)
[»] chr2 (4 HSPs)
chr2 (141-234)||(35611435-35611528)
chr2 (141-234)||(27194264-27194357)
chr2 (141-234)||(27844078-27844171)
chr2 (141-234)||(39441417-39441509)
[»] chr6 (1 HSPs)
chr6 (145-234)||(16015370-16015459)
[»] scaffold0356 (1 HSPs)
scaffold0356 (140-223)||(15393-15476)
[»] chr4 (1 HSPs)
chr4 (141-223)||(31921507-31921589)
[»] chr3 (1 HSPs)
chr3 (141-223)||(41763465-41763547)
[»] chr1 (1 HSPs)
chr1 (143-223)||(2330961-2331041)
[»] chr5 (1 HSPs)
chr5 (141-234)||(14191144-14191240)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 5195138 - 5195379
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||   ||||||||||||||||||||||    
T  5195138 gaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagaccatgctagaactgttgccaactgatgaaaaaattaactttatg 5195237  T
Q  109 ttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  5195238 ttagaattttaatgttgctgtcatcaactcatagacatgtttttacgttgaagtttgattttacctcttaatacattttaagtgcagctcttccttttat 5195337  T
Q  209 tgttgcataatgacatgccatttgttttgataattatggaaa 250  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  5195338 tgttgcataatgacatgccatttgttttcataattatggaaa 5195379  T

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Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 5198948 - 5198717
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||   ||||||||||||||||||||||    
T  5198948 gaagaatgtgaaagtcataagctcggtgaagattgatgataatattgatttcaagaccatgctagaactgttgccaactgatgaaaaaattaactttatg 5198849  T
Q  109 ttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  5198848 ttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttgattttacctctaaatgcattttaagtgcaactcttccttttat 5198749  T
Q  209 tgttgcataatgacatgccatttgttttgata 240  Q
    ||||||||||||||||||||||||||||||||    
T  5198748 tgttgcataatgacatgccatttgttttgata 5198717  T

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Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 5177702 - 5177931
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||  |||  ||||||||||  ||||||    
T  5177702 gaagaatgtgaaagtcataagctcagtgaagattgatgataatattgacttcaagaccatgctagaattgttgccaattggagaaaaaattagttttatg 5177801  T
Q  109 ttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttat 208  Q
    |||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||  ||||||||| ||||||||||||||| | | ||||||||      
T  5177802 ttagaattttaatgttgctgtcataatctcatagacgtgtttttattttgaagtttga--ttacctcttgatgcattttaagtgctgctgttccttttta 5177899  T
Q  209 tgttgcataatgacatgccatttgttttgata 240  Q
    |||| |  |||||||  |||||||||||||||    
T  5177900 tgtttctgaatgacacaccatttgttttgata 5177931  T

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Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 6231654 - 6231830
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||   ||  | |||||||| |||||||    
T  6231654 gaagaatgtgaaagtcataagctcattgaagaatgataagaatattgatttcaagaccatgctagaattgttgccaaatggaggaaaaattagctttatg 6231753  T
Q  109 ttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaa 179  Q
    ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  6231754 ttagaattttaatgttgctgacgctgtcataaactcatagacatgtttttactttgaagtttgatattacctcttaa 6231830  T

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Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 5185144 - 5185320
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||  |||| ||| |||||| |||| ||    
T  5185144 gaagaatgtgaaagtcataagctcaatgaagattgatgataatattgacttcaagaccatgctagaattgttgccaattgaagaagaaattagctttgtg 5185243  T
Q  109 ttagaattttaatgt------tgctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaa 179  Q
    ||||| |||||||||      ||||||||| ||||||  |||||||||||||||  ||||||||| |||||||||||    
T  5185244 ttagagttttaatgttgctgatgctgtcataaactcagtgacatgtttttacttcaaagtttgatgttacctcttaa 5185320  T

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Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 1795865 - 1795686
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaa---aaaattaacttt 105  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||   ||  |||       ||| ||||    
T  1795865 gaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagaccatgctagaattgttgccaaatggagaatttttttttagcttt 1795766  T
Q  106 atgttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaa 179  Q
    |||||||||||||||||||      |||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  1795765 atgttagaattttaatgttgctgacgctgccataaactcatagacatgttttttctttgaagtttgatgttacctcttaa 1795686  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 33861565 - 33861483
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 223  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  33861565 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 33861483  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 5207162 - 5207299
Alignment:
Q  35 tgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgttgctgtcatca 134  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    |||  ||| |||||| |||||  |||||| ||||| |||| | ||||||    
T  5207162 tgaagattgatgagaatgttgatttcaagaccatgttagaattgttgggatttggagaagaaattagctttaccttagaagtttaaggttgttttcatca 5207261  T
Q  135 actcatagacatgtttttactttgaagtttgattttacct 174  Q
    ||| |||||||||  |||||||  ||||||||| ||||||    
T  5207262 actgatagacatg--tttacttccaagtttgatgttacct 5207299  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 5178836 - 5179012
Alignment:
Q  9 gaagaatatgaaagtcataagctcagtgaagattgatgagaatattggtttcaagaccatgctagaattgttgcccgttgatgaaaaaattaactttatg 108  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||||  |||  |||||| ||| |||||||    
T  5178836 gaagaatgtgaaagtcataagctcaatgaagattgatgataatattgatttcaagaccattctagaattgttgccaattggagaaaaatttagctttatg 5178935  T
Q  109 ttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactttgaagtttgattttacctcttaa 179  Q
    ||||||||||||||||      |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  5178936 ttagaattttaatgttgttgacgctgtcataaactcatagacatgtttttacttcgaagtttgatgttacctcttaa 5179012  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 35611435 - 35611528
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||||||||||    
T  35611435 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagtttttccttttaaagttgcataatgacacgccatttgtt 35611528  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 27194264 - 27194357
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| |  ||||||||||||||  |||||||||    
T  27194264 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttcctttcaaagttgcataatgacacaccatttgtt 27194357  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 27844078 - 27844171
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| |  ||||||||||||||  |||||||||    
T  27844078 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttcctttcaaagttgcataatgacacaccatttgtt 27844171  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 39441509 - 39441417
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||| | |||||||||  |||||||||||||| ||||||||||    
T  39441509 agacatgtttttactttgaagttttatgttacctcttaatgca-tttaagtgcagcttttccttttaaagttgcataatgacacgccatttgtt 39441417  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 16015459 - 16015370
Alignment:
Q  145 atgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  |||||||||||||| ||||||||||    
T  16015459 atgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgacacgccatttgtt 16015370  T

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Target: scaffold0356 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 15476 - 15393
Alignment:
Q  140 tagacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 223  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  15476 tagacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 15393  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 31921507 - 31921589
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 223  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  31921507 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 31921589  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 41763547 - 41763465
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 223  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  41763547 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 41763465  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 2330961 - 2331041
Alignment:
Q  143 acatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 223  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  2330961 acatgtttttactttgaagttttacgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 2331041  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 14191240 - 14191144
Alignment:
Q  141 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcag---ttcttccttttattgttgcataatgacatgccatttgtt 234  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||   |  |||||||||  |||||||||||||| ||||||||||    
T  14191240 agacatgtttttacttcgaagttttatgttacctcttaatgcattttaagtgcagctttatttccttttaaagttgcataatgacacgccatttgtt 14191144  T

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