View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_4 (Length: 608)
Name: NF7824_low_4
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 6 - 591
Target Start/End: Complemental strand, 31525519 - 31524934
Alignment:
| Q |
6 |
caccgcacacacggagtgatatatggacccataacatacatattacactcgttcttatatttgttattttttcttattattagacctatgacatcactga |
105 |
Q |
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|||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31525519 |
caccacacatacggagtgatatatggacccataatatacttattacactcgttcttatatttgttattttttcttattattagacccatgacatcactga |
31525420 |
T |
|
| Q |
106 |
ttttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatcttgtttgtttattattttggccacatgagacaatgcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31525419 |
ttttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatcttgtttgtttattattttggccacatgagacaatgcgt |
31525320 |
T |
|
| Q |
206 |
tataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactctttccctcacgtggtttctcttcccattttggtccaccaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525319 |
tataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactctttccctcacgtggtttctcttcccattttggtccaccaa |
31525220 |
T |
|
| Q |
306 |
aattacttttctcaccaaacttgctatatcttccctatccaccacattcttccccggcgacaccacagtcctcaccgcaacaccaagctcctccaccaac |
405 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525219 |
aattacctttctcaccaaacttgctatctcttccctctccaccacattcttccccggcgacaccacagtcctcaccgcaacaccaagctcctccaccaac |
31525120 |
T |
|
| Q |
406 |
aacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcacagaaccccacccacagtgtgaaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31525119 |
aacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcactgaaccccacccacagtgtgaaa |
31525020 |
T |
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| Q |
506 |
caaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaatt |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525019 |
caaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaatt |
31524934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 524
Target Start/End: Complemental strand, 38003492 - 38003429
Alignment:
| Q |
461 |
cgttggttaaactctcaagcacagaaccccacccacagtgtgaaacaaaaccaccaatggaagg |
524 |
Q |
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|||| |||| ||||||||||||| ||||||||||||| || ||| |||||||||||| ||||| |
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| T |
38003492 |
cgttcgttatactctcaagcacataaccccacccacattgcgaatgaaaaccaccaatagaagg |
38003429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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