View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_low_41 (Length: 236)

Name: NF7824_low_41
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_low_41
NF7824_low_41
[»] chr8 (6 HSPs)
chr8 (139-226)||(2429822-2429909)
chr8 (17-100)||(2429942-2430025)
chr8 (17-94)||(2436279-2436357)
chr8 (174-213)||(2432817-2432856)
chr8 (174-213)||(2436178-2436217)
chr8 (183-213)||(2516147-2516177)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 2429909 - 2429822
Alignment:
Q  139 cacaaatatttaaccaaagaatctgcgttcattctttcactcatgagcaacaacaaccacttgtttaccaacattttgaccaccaaac 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2429909 cacaaatatttaaccaaagaatctgcgttcattctttcactcatgagcaacaacaaccacttgtttaccaacattttgaccactaaac 2429822  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 2430025 - 2429942
Alignment:
Q  17 aagaagatattacaatcaacagagtggatgaagaggctcgcaaaggtcctccaaagggtgctccatgcacaagtaactaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430025 aagaagatattacaatcaacagagtggatgaagaggctcgcaaaggtcctccaaagggtgctccatgcacaagtaactaaacac 2429942  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 2436357 - 2436279
Alignment:
Q  17 aagaagata-ttacaatcaacagagtggatgaagaggctcgcaaaggtcctccaaagggtgctccatgcacaagtaact 94  Q
    ||||||||| |||||||||||||| |||||||||||| |  |||||||| |||||||  |||||||| |||||||||||    
T  2436357 aagaagataattacaatcaacagattggatgaagaggtttccaaaggtcatccaaagaatgctccatacacaagtaact 2436279  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 2432856 - 2432817
Alignment:
Q  174 ttcactcatgagcaacaacaaccacttgtttaccaacatt 213  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  2432856 ttcattcatgagcaacaacaaccacttgtttaccaacatt 2432817  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 2436217 - 2436178
Alignment:
Q  174 ttcactcatgagcaacaacaaccacttgtttaccaacatt 213  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  2436217 ttcattcatgagcaacagcaaccacttgtttaccaacatt 2436178  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 2516147 - 2516177
Alignment:
Q  183 gagcaacaacaaccacttgtttaccaacatt 213  Q
    |||||||||||||||||||||||||||||||    
T  2516147 gagcaacaacaaccacttgtttaccaacatt 2516177  T

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