View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_low_5 (Length: 586)
Name: NF7824_low_5
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_5 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 2887285 - 2886700
Alignment:
| Q |
1 |
ccatttatcagatccaaaagtatgaaaaattagtatatgatccaaatgccaaatatctcaatcaatcaaatagtaaaaacagaaaaatcagtgtcttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887285 |
ccatttatcagatccaaaagtatgaaaaattagtatatgatccaaatgccaaatatctcaatcaatcaaatagtaaaaacagaaaaatcagtgtcttgag |
2887186 |
T |
|
| Q |
101 |
ttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887185 |
ttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaat |
2887086 |
T |
|
| Q |
201 |
ggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887085 |
ggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagt |
2886986 |
T |
|
| Q |
301 |
tttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2886985 |
tttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccactaacaccc |
2886886 |
T |
|
| Q |
401 |
ttcaaaagtactaatctatcctctactaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattgtt |
500 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2886885 |
ttcaaaagtactaatctatcctctagtaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattgtt |
2886786 |
T |
|
| Q |
501 |
tgaaaaccaaatcttaaattgtaataaacttttataatctcacttacctgtggcatgtcaacagaatatacaacatcgtcaaaggc |
586 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2886785 |
tgaaaaccaaatcttaaattgtaaaaaacttttataatctcacttacctgtggcatgtcaacagaatatacaacatcgtcaaaggc |
2886700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 75 - 584
Target Start/End: Original strand, 2897161 - 2897672
Alignment:
| Q |
75 |
aaaaacagaaaaatca----gtgtcttgagttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagacca |
170 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2897161 |
aaaaacagaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgctggtaaacgaagccaggccgagtagacca |
2897260 |
T |
|
| Q |
171 |
gtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||| |
|
|
| T |
2897261 |
ttgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaat |
2897360 |
T |
|
| Q |
271 |
ttttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgaga |
370 |
Q |
| |
|
||||||| | || || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
2897361 |
ttttatggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgaga |
2897460 |
T |
|
| Q |
371 |
acaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactaccccttgaaccttcatttcctgccaattagaatctcaagagt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| ||| |
|
|
| T |
2897461 |
acaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatactcaatagt |
2897560 |
T |
|
| Q |
471 |
taaggtccaaagttaactaaaaacattgtttgaaaaccaaatcttaaattgtaataaacttttataatctcacttacctgtggcatgtcaacagaatata |
570 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||| |||||||| |||| ||| ||||| | || | ||||||||||||||||||||| ||||||| |
|
|
| T |
2897561 |
taaggttcaaagttaactgaacacattgtttgaaaatcaaatcttcaattataacttactttgaaaa--tgacttacctgtggcatgtcaactgaatata |
2897658 |
T |
|
| Q |
571 |
caacatcgtcaaag |
584 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
2897659 |
caacttggtcaaag |
2897672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 104 - 453
Target Start/End: Complemental strand, 2877415 - 2877066
Alignment:
| Q |
104 |
taaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatgga |
203 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || | | ||||||||||||||||| ||||| || |||| |
|
|
| T |
2877415 |
taaatactaacctttctggtattggaatcaacttctgccggtaaacgaagccaagctgaatacagtaaggactcatagacagtaacttgaggggagtgga |
2877316 |
T |
|
| Q |
204 |
tatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagtttt |
303 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2877315 |
tatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactagtttt |
2877216 |
T |
|
| Q |
304 |
cctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttc |
403 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2877215 |
cctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcccttc |
2877116 |
T |
|
| Q |
404 |
aaaagtactaatctatcctctactaccccttgaaccttcatttcctgcca |
453 |
Q |
| |
|
||||| |||| |||||||||| || |||||| | |||||||||||||| |
|
|
| T |
2877115 |
aaaagcactagcctatcctctatcacaccttgatctttcatttcctgcca |
2877066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 113 - 453
Target Start/End: Original strand, 44223125 - 44223465
Alignment:
| Q |
113 |
acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct |
212 |
Q |
| |
|
||||||||||| || |||||||| ||| |||||||||||||| ||||| || | || |||||||| || |||||||| || |||||||||||||||| |
|
|
| T |
44223125 |
acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattct |
44223224 |
T |
|
| Q |
213 |
gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc |
312 |
Q |
| |
|
||||||| || ||||| |||| |||||| |||||||| ||||||||||||||||||| || ||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
44223225 |
gctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc |
44223324 |
T |
|
| Q |
313 |
caaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtact |
412 |
Q |
| |
|
|| ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||| ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
44223325 |
cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaagcact |
44223424 |
T |
|
| Q |
413 |
aatctatcctctactaccccttgaaccttcatttcctgcca |
453 |
Q |
| |
|
||||| || ||| || ||||| |||||||||||||||| |
|
|
| T |
44223425 |
aatctgtcttctctaacaccttgctccttcatttcctgcca |
44223465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 113 - 453
Target Start/End: Original strand, 44233947 - 44234287
Alignment:
| Q |
113 |
acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct |
212 |
Q |
| |
|
||||||||||| || |||||||| ||| |||||||||||||| || ||||| | || |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
44233947 |
acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattct |
44234046 |
T |
|
| Q |
213 |
gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc |
312 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||| |||||||| |||||||||| || ||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
44234047 |
gctcacagtaaccggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc |
44234146 |
T |
|
| Q |
313 |
caaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtact |
412 |
Q |
| |
|
|| ||||||||| | ||| ||||||||||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
44234147 |
cagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcgccactaacacccttcaaaagcact |
44234246 |
T |
|
| Q |
413 |
aatctatcctctactaccccttgaaccttcatttcctgcca |
453 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||||| |
|
|
| T |
44234247 |
aatctgtcctctgtaacaccttgctccttcatttcctgcca |
44234287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 113 - 453
Target Start/End: Original strand, 44210963 - 44211303
Alignment:
| Q |
113 |
acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct |
212 |
Q |
| |
|
|||||||| ||||| |||||||| | | |||||||||||||| || ||||| | || || ||||| || ||||||||||| ||||| |||||||||| |
|
|
| T |
44210963 |
acctttctagtattggaatcaactccagaaggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatcattct |
44211062 |
T |
|
| Q |
213 |
gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc |
312 |
Q |
| |
|
| ||||| || ||||| |||| |||||| |||||||| ||||||||||||||||||| || ||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
44211063 |
gttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc |
44211162 |
T |
|
| Q |
313 |
caaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtact |
412 |
Q |
| |
|
|| ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||| ||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
44211163 |
cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccgctaacacccttcaaaagcact |
44211262 |
T |
|
| Q |
413 |
aatctatcctctactaccccttgaaccttcatttcctgcca |
453 |
Q |
| |
|
| ||| |||||| || ||||| |||||||||||||||| |
|
|
| T |
44211263 |
agtctgtcctctgtaacaccttgctccttcatttcctgcca |
44211303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 43457689 - 43457796
Alignment:
| Q |
284 |
tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaa |
383 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||| |||||||| | |
|
|
| T |
43457689 |
tcaatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctga |
43457788 |
T |
|
| Q |
384 |
atgcacca |
391 |
Q |
| |
|
|||||||| |
|
|
| T |
43457789 |
atgcacca |
43457796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 39589339 - 39589547
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| || ||||| || ||||||||| | | |
|
|
| T |
39589339 |
tcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtga |
39589438 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| | ||||||| ||||||||||| ||||| || | || |||||||| |||||||||||||| |
|
|
| T |
39589439 |
tggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaacacc |
39589538 |
T |
|
| Q |
376 |
aggcctaaa |
384 |
Q |
| |
|
||||||||| |
|
|
| T |
39589539 |
aggcctaaa |
39589547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 408
Target Start/End: Original strand, 39547511 - 39547743
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||| || || || |||| ||||| || ||||| || || || || ||||| ||| | | |
|
|
| T |
39547511 |
tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtga |
39547610 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| | |||||||| | ||| ||||| || || ||| | || ||||| | |||||||||||||| |
|
|
| T |
39547611 |
tgttcccaccaatatatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacacc |
39547710 |
T |
|
| Q |
376 |
aggcctaaatgcaccactaacacccttcaaaag |
408 |
Q |
| |
|
||| || || || ||||| |||||||||||||| |
|
|
| T |
39547711 |
aggtctgaaagctccacttacacccttcaaaag |
39547743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 408
Target Start/End: Original strand, 39564290 - 39564522
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| || || || | || |||||| | | |
|
|
| T |
39564290 |
tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga |
39564389 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| || || ||||||||||||| | |||||||| | ||| ||||| ||||| || | || ||||||| |||||||||||||| |
|
|
| T |
39564390 |
tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacacc |
39564489 |
T |
|
| Q |
376 |
aggcctaaatgcaccactaacacccttcaaaag |
408 |
Q |
| |
|
||| || || || ||||| |||||||||||||| |
|
|
| T |
39564490 |
aggtctgaaagctccacttacacccttcaaaag |
39564522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 423
Target Start/End: Complemental strand, 39338810 - 39338563
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||| ||||| |||||||| || || || | || |||||||| | |
|
|
| T |
39338810 |
tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttga |
39338711 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| | |||||||| | ||| ||||| ||||| || | | ||||| | || ||||||||||| |
|
|
| T |
39338710 |
tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacc |
39338611 |
T |
|
| Q |
376 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctc |
423 |
Q |
| |
|
|| || || || ||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
39338610 |
tggtctgaaagctccacttacacccttcaaaagaactaacttatcctc |
39338563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 414
Target Start/End: Complemental strand, 39353653 - 39353415
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||| || ||||| |||| ||||| |||||||| ||||| || || || |||||| | | |
|
|
| T |
39353653 |
tcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtga |
39353554 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| ||||| ||||| ||||||| | |||||||||| ||| ||||| ||||| ||| | | ||||| | || ||||||||||| |
|
|
| T |
39353553 |
tgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacc |
39353454 |
T |
|
| Q |
376 |
aggcctaaatgcaccactaacacccttcaaaagtactaa |
414 |
Q |
| |
|
|| || || || ||||| |||||||| ||||| ||||| |
|
|
| T |
39353453 |
tggtctgaaagctccacttacaccctttaaaagaactaa |
39353415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 176 - 423
Target Start/End: Complemental strand, 39366163 - 39365916
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| || || ||||| |||| ||||| |||||||| || || || || ||||| ||| | | |
|
|
| T |
39366163 |
tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtga |
39366064 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacacc |
375 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
39366063 |
tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacc |
39365964 |
T |
|
| Q |
376 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctc |
423 |
Q |
| |
|
|| || || || ||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
39365963 |
tggtctgaaagctccactaagacccttcagaagaactaacttatcctc |
39365916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 408
Target Start/End: Original strand, 39575098 - 39575333
Alignment:
| Q |
173 |
gactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattt |
272 |
Q |
| |
|
||||||||||| |||| ||||||||| || |||||||| |||||||| || || || |||| ||||| |||||||| ||||| || | ||| |||| | |
|
|
| T |
39575098 |
gactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactg |
39575197 |
T |
|
| Q |
273 |
ttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaac |
372 |
Q |
| |
|
| ||| |||| |||||| || ||| ||||||||||||| | |||||||| ||||| ||||| ||||| ||| | || ||||| | ||||||||||| |
|
|
| T |
39575198 |
tgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaac |
39575297 |
T |
|
| Q |
373 |
accaggcctaaatgcaccactaacacccttcaaaag |
408 |
Q |
| |
|
||| |||||||| || || || ||||| |||||||| |
|
|
| T |
39575298 |
acctggcctaaaagctccgctgacaccgttcaaaag |
39575333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 39538053 - 39538188
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||| || || || |||| ||||| || ||||| || || || || ||||||||| | | |
|
|
| T |
39538053 |
tcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtga |
39538152 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccag |
311 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| |
|
|
| T |
39538153 |
tgttcccaccaatatatccaccagtttttctaccag |
39538188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 324
Target Start/End: Original strand, 42133047 - 42133195
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
275 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||| ||||||||||||||| || ||||||||| ||| ||| || || ||||| ||||| || || | |
|
|
| T |
42133047 |
tcatagacagttacatagggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaa |
42133146 |
T |
|
| Q |
276 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccat |
324 |
Q |
| |
|
| || || |||||||| ||||| ||||| || || || || |||||||| |
|
|
| T |
42133147 |
tacttccttcaatatatccacctgtttttcttccggctaatacatccat |
42133195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 42171834 - 42171890
Alignment:
| Q |
170 |
agtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataacca |
226 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| || || |||||| |
|
|
| T |
42171834 |
agtgattcatagacagtaacatgaggagaatgaatatcattctgttcgcagtaacca |
42171890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 1084844 - 1084984
Alignment:
| Q |
173 |
gactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg-tttttta-gggtacccagaaat |
270 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| | |||||||| || ||||| |||| | ||| |||||||| |||| || || || |||||||| |
|
|
| T |
1084844 |
gactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaat |
1084943 |
T |
|
| Q |
271 |
ttttatgctcccgtcaatataaccaccagttttcctaccag |
311 |
Q |
| |
|
| | ||| |||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
1084944 |
tatgatgttcccaccaatatatccatcagtttttctaccag |
1084984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 409
Target Start/End: Original strand, 2160847 - 2161114
Alignment:
| Q |
142 |
tggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaac |
241 |
Q |
| |
|
||||||||||||||| ||||| || | || || ||||| || ||||||| ||| |||||||||||| ||||| ||||| || || || |||||||| |
|
|
| T |
2160847 |
tggtaaacgaagccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaat |
2160946 |
T |
|
| Q |
242 |
gtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccag |
341 |
Q |
| |
|
|||| ||| || || || || || || ||| | ||| | || |||||||| |||||||||||||| ||||| ||||||||||||| |||||| || || | |
|
|
| T |
2160947 |
gttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccgg |
2161046 |
T |
|
| Q |
342 |
ctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaagt |
409 |
Q |
| |
|
| ||||| || ||||| || ||||| || || ||||||||||| || ||| | | ||||||||||||| |
|
|
| T |
2161047 |
caccacttacacccatcaaagcagttagtactccaggcctaaaggcgccattgatacccttcaaaagt |
2161114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 308 - 409
Target Start/End: Original strand, 2149030 - 2149131
Alignment:
| Q |
308 |
ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaa |
407 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| ||||| || ||||| || || || || || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
2149030 |
ccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccaggtctaaaagcaccactaacacccttcaaaa |
2149129 |
T |
|
| Q |
408 |
gt |
409 |
Q |
| |
|
|| |
|
|
| T |
2149130 |
gt |
2149131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 41687770 - 41687821
Alignment:
| Q |
275 |
atgctcccgtcaatataaccaccagttttcctaccagccaaaacatccatta |
326 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
41687770 |
atgctcccttcaatataaccaccagtttttcttccagcaagaacatccatta |
41687821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 384
Target Start/End: Complemental strand, 4501368 - 4501168
Alignment:
| Q |
184 |
agtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccg |
283 |
Q |
| |
|
|||||| ||||| ||||| |||||| | || |||||||||||||| | || ||||| |||||||| || |||||||| ||||| ||| | | || |
|
|
| T |
4501368 |
agtaacttgaggtgaatgaatatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttcttagggtatccagagattctaacatctcct |
4501269 |
T |
|
| Q |
284 |
tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaa |
383 |
Q |
| |
|
||||| || |||||||| || || || || ||||||||||||||||| || || || || |||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
4501268 |
tcaatgtagccaccagtctttcttcctgctaaaacatccattaaagttgtcttcccggcaccactaactcccattagtgcagtaagaactccaggcctaa |
4501169 |
T |
|
| Q |
384 |
a |
384 |
Q |
| |
|
| |
|
|
| T |
4501168 |
a |
4501168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 49773298 - 49773210
Alignment:
| Q |
176 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtaccc |
264 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | |||||||| || || || || |||| ||| |||||||| || ||||||||||| |
|
|
| T |
49773298 |
tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttgcttcttagggtaccc |
49773210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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