View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_low_7 (Length: 547)

Name: NF7824_low_7
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_low_7
NF7824_low_7
[»] chr7 (5 HSPs)
chr7 (18-435)||(26640846-26641274)
chr7 (285-353)||(8670931-8670999)
chr7 (266-413)||(1756774-1756921)
chr7 (269-361)||(10656100-10656192)
chr7 (262-337)||(9236888-9236963)
[»] chr1 (6 HSPs)
chr1 (209-398)||(9923782-9923972)
chr1 (210-367)||(12198622-12198779)
chr1 (224-384)||(11910085-11910246)
chr1 (322-413)||(39452158-39452249)
chr1 (262-337)||(28632684-28632759)
chr1 (269-361)||(41385311-41385403)
[»] chr4 (6 HSPs)
chr4 (210-337)||(36083556-36083684)
chr4 (262-418)||(30253038-30253194)
chr4 (262-413)||(12115942-12116092)
chr4 (225-337)||(26189436-26189550)
chr4 (259-308)||(5284261-5284310)
chr4 (262-360)||(24741191-24741287)
[»] chr2 (8 HSPs)
chr2 (66-384)||(38415677-38416006)
chr2 (207-409)||(9751873-9752076)
chr2 (66-138)||(8691352-8691424)
chr2 (263-363)||(16114245-16114345)
chr2 (271-384)||(28839809-28839922)
chr2 (303-416)||(34486030-34486143)
chr2 (285-359)||(35531755-35531829)
chr2 (288-337)||(13654765-13654814)
[»] chr3 (7 HSPs)
chr3 (262-413)||(1319071-1319222)
chr3 (262-400)||(4245766-4245904)
chr3 (262-411)||(4293304-4293452)
chr3 (269-361)||(36869975-36870067)
chr3 (354-418)||(32233953-32234017)
chr3 (71-134)||(4293554-4293617)
chr3 (210-292)||(28714227-28714308)
[»] chr8 (4 HSPs)
chr8 (262-418)||(18983683-18983829)
chr8 (262-413)||(26945671-26945822)
chr8 (260-360)||(17898718-17898818)
chr8 (272-361)||(24674577-24674666)
[»] chr5 (8 HSPs)
chr5 (272-367)||(6132854-6132949)
chr5 (88-204)||(12317719-12317835)
chr5 (274-412)||(28753400-28753538)
chr5 (259-308)||(20355675-20355724)
chr5 (210-413)||(12317857-12318061)
chr5 (304-414)||(15435991-15436100)
chr5 (272-337)||(38386553-38386618)
chr5 (18-46)||(12317683-12317711)
[»] scaffold0458 (1 HSPs)
scaffold0458 (322-413)||(11423-11514)
[»] chr6 (7 HSPs)
chr6 (262-361)||(21077308-21077407)
chr6 (285-359)||(11761436-11761510)
chr6 (69-143)||(20743236-20743310)
chr6 (263-365)||(21053594-21053696)
chr6 (262-361)||(21054043-21054141)
chr6 (83-157)||(31866431-31866505)
chr6 (269-337)||(21076880-21076948)
[»] scaffold0127 (2 HSPs)
scaffold0127 (263-361)||(28494-28592)
scaffold0127 (263-361)||(35400-35498)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 26640846 - 26641274
Alignment:
Q  18 cttttggcattcattaatagaaaataaaaaagtattttattgttccattaactttcctgcggattgattaagtttcctgaggattttcctgctgaaacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26640846 cttttggcattcattaatagaaaataaaaaagtattttattgttccagtaactttcctgcggattgattaagtttcctgaggattttcctgctgaaacag 26640945  T
Q  118 ctttgctggggaattacatgtggaattgccttcggaatcatctgcggaatgctcgcgggaaacattcac-gggcaggggcaacttctcac---------- 206  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||              
T  26640946 ctttgctggggaattacatgtggaattgcc-tcggaattatctgcggaatgctcgcgggaaacattcacggggcaggggcaatttctcacactctgacca 26641044  T
Q  207 -acttttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacattt-ctgcggttcctaaaattctcagtaaacaattacccactaaagt 304  Q
     |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||| ||||| ||||||||  ||||||| ||    
T  26641045 aacttttcctgcggaagtttgtccagttttcttaggaaatttccgcaggtacatttcctgcggtttctaaaatcctcaggaaacaatt-tccactaaggt 26641143  T
Q  305 attacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggag 404  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  26641144 attacctgggaaaattaatccttgataaaatccgctggaaacaggtttcctgcggaaatttcagtataatccgtaggaaattccggaggaaaatcgggag 26641243  T
Q  405 tttctagtaatgatcaaaccaaaccattgat 435  Q
    |||||||||||||||||||||||||||||||    
T  26641244 tttctagtaatgatcaaaccaaaccattgat 26641274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 8670999 - 8670931
Alignment:
Q  285 aaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttc 353  Q
    ||||||||||| || || |||||||||||||| |||||||||||| ||||||| | |||||||||||||    
T  8670999 aaacaattacctacgaaggtattacctgggaaccttaatccttggcaaaatccgcaggaaacaggtttc 8670931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 413
Target Start/End: Original strand, 1756774 - 1756921
Alignment:
Q  266 ggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaattt 365  Q
    |||| ||||||| ||||| |||||||||||||| || ||  ||| |||||| || ||||| ||| ||| ||| | ||||||| ||||||||||||| |||    
T  1756774 ggttactaaaatcctcagaaaacaattacccacaaaggttatacatgggaacctaaatccatggcaaattccgcaggaaacatgtttcctgcggaacttt 1756873  T
Q  366 cattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
    |  ||| ||| ||||  ||| ||  |||||||||| ||||||||||||    
T  1756874 ctctattatcagcagataatcccccaggaaaatcgagagtttctagta 1756921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 10656100 - 10656192
Alignment:
Q  269 tcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    ||||||||| ||||| || |||||| |||| || |||||||||||||| || |||  |||| ||||||| | |||||| ||||||||||||||    
T  10656100 tcctaaaatcctcaggaatcaattatccacgaaggtattacctgggaatctgaataattgggaaaatccgcaggaaaccggtttcctgcggaa 10656192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 9236963 - 9236888
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatcc 337  Q
    |||||| ||||||| | ||| | || ||||||||||| || |||||||||||||| || ||||||||| |||||||    
T  9236963 ctgcggatcctaaattcctcgggaatcaattacccacgaaggtattacctgggaacctgaatccttgggaaaatcc 9236888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 209 - 398
Target Start/End: Complemental strand, 9923972 - 9923782
Alignment:
Q  209 ttttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtatt 307  Q
    ||||||||||||  ||||| || |||  ||||| ||||||| |||||| ||||| ||||||| ||||||| ||||| |||||||||||||| || |||||    
T  9923972 ttttcctgcggatttttgttcaatttttttaggcaatttccgcaggtaaatttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtatt 9923873  T
Q  308 acctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaat 398  Q
    ||||||||| |||||||||||| ||||||| | | ||||  |||||||||||| |||||| | || || ||||||||||||| ||||||||    
T  9923872 acctgggaaccttaatccttggcaaaatccgcagaaaacttgtttcctgcggatatttcagtgtattcagcaggaaattccgcaggaaaat 9923782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 367
Target Start/End: Complemental strand, 12198779 - 12198622
Alignment:
Q  210 tttcctgcggaagtttgtccagtttccttaggaaatttcctcaggt-acatttctgcggttcctaaaattctcagtaaacaattacccactaaagtatta 308  Q
    |||||||||||   ||||||  ||||||||||| |||||| ||||| || || || ||||| ||||||| ||||| |||||||||||||| || ||||||    
T  12198779 tttcctgcggattattgtccgatttccttaggatatttccgcaggtgactttcctacggttactaaaatcctcag-aaacaattacccacaaaggtatta 12198681  T
Q  309 cctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttca 367  Q
    |||||||| |||||| ||||| ||||||| | ||||||||| |||||||||||||||||    
T  12198680 cctgggaaccttaattcttggcaaaatccgcaggaaacaggattcctgcggaaatttca 12198622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 384
Target Start/End: Complemental strand, 11910246 - 11910085
Alignment:
Q  224 ttgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaa 322  Q
    ||||||| |||||||||||||||||| |||||   |||| || |||||||||||| ||||| ||||||||| |||| || ||||||||||| || |||||    
T  11910246 ttgtccaatttccttaggaaatttccgcaggttagtttcctggggttcctaaaatcctcaggaaacaattagccacgaaggtattacctggtaaccttaa 11910147  T
Q  323 tccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaa 384  Q
    || |||| ||||||  | ||||||||||||| ||||||||||| |  |||| ||||||||||    
T  11910146 tcgttggcaaaatctgcaggaaacaggtttcttgcggaaattttagcataacccgcaggaaa 11910085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 39452158 - 39452249
Alignment:
Q  322 atccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
    |||| ||| ||||||| ||||||||| |||||||||||||  | |||| | ||||||||||||| ||  |||||||||| ||||||||||||    
T  39452158 atccatggcaaaatccgctggaaacaagtttcctgcggaatatacattgttatccgcaggaaatgccccaggaaaatcgtgagtttctagta 39452249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 28632684 - 28632759
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatcc 337  Q
    |||||||||||| ||||||||| |||||||||| ||  || |||||||| ||||| || |||||||||| ||||||    
T  28632684 ctgcggttcctataattctcaggaaacaattactcataaaggtattaccagggaatctaaatccttggtcaaatcc 28632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 41385403 - 41385311
Alignment:
Q  269 tcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    ||||||||| ||||| || | ||||| ||| || |||||||||||||| || ||||||| | ||||||| |  ||||| | ||||||||||||    
T  41385403 tcctaaaatcctcaggaatccattacacacgaaggtattacctgggaacctgaatccttaggaaaatccgcatgaaaccgatttcctgcggaa 41385311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 210 - 337
Target Start/End: Complemental strand, 36083684 - 36083556
Alignment:
Q  210 tttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtatta 308  Q
    |||||||||||   ||||||| |||||||||||||||||| |||||   |||| ||||||||||||||| ||||| |||||||||||||| || ||||||    
T  36083684 tttcctgcggattattgtccaatttccttaggaaatttccgcaggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtatta 36083585  T
Q  309 cctgggaaacttaatccttggtaaaatcc 337  Q
    |||||||| |||||||||||| |||||||    
T  36083584 cctgggaaccttaatccttggcaaaatcc 36083556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 418
Target Start/End: Complemental strand, 30253194 - 30253038
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||||| ||||||||||||| |||||||||||||| || ||  ||| ||||||  | |||||| |||||||||| | |||||||||||||||||| ||    
T  30253194 ctgcggttactaaaattctcaggaaacaattacccacgaaggtcatacttgggaacttaaatcctaggtaaaatccccaggaaacaggtttcctgcgaaa 30253095  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagtaatgat 418  Q
     |||||    |||||||||| ||||||  |||||||||| ||| |||||||| ||||    
T  30253094 ttttcaccccaatccgcaggtaattccacaggaaaatcgagagattctagtagtgat 30253038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 413
Target Start/End: Original strand, 12115942 - 12116092
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||| |||||||||||| || |||||||||||||| || || ||||||||||| |  | ||||||| ||| |||   ||||||  |||| ||| ||||    
T  12115942 ctgcggatcctaaaattctaaggaaacaattacccacgaaggtgttacctgggaaccaaattccttggcaaattccgtaggaaacgtgtttactgtggaa 12116041  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
     ||||| |  || ||||||||||||||  |||||||||| ||||||||||||    
T  12116042 ttttcagtgaaacccgcaggaaattcc-caggaaaatcgagagtttctagta 12116092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 26189550 - 26189436
Alignment:
Q  225 tgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaact-taa 322  Q
    |||||| ||| |||||||||||||| |||||   |||| ||||||| ||||||||||||| |||||||||||||  || ||||||||| ||  ||| |||    
T  26189550 tgtccaattttcttaggaaatttccccaggtgattttcctgcggtttctaaaattctcagaaaacaattacccatgaaggtattaccttggggactctaa 26189451  T
Q  323 tccttggtaaaatcc 337  Q
    ||||||| |||||||    
T  26189450 tccttggcaaaatcc 26189436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 5284310 - 5284261
Alignment:
Q  259 tttctgcggttcctaaaattctcagtaaacaattacccactaaagtatta 308  Q
    ||||||||||||||||||| ||||| |||||||||||||| || ||||||    
T  5284310 tttctgcggttcctaaaatcctcaggaaacaattacccacaaaggtatta 5284261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 24741287 - 24741191
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcgga 360  Q
    |||||| |||| |||| ||||| || |||||||| || || ||||||| ||||||||| ||||||||| ||||||| |  ||||| |||||||||||||    
T  24741287 ctgcggatccttaaatcctcaggaatcaattacc-acgaacgtattac-tgggaaactgaatccttggaaaaatccgcatgaaaccggtttcctgcgga 24741191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 66 - 384
Target Start/End: Original strand, 38415677 - 38416006
Alignment:
Q  66 taactttcctgcggattgattaagtttcctgaggattttcctgctgaaacagctttgctggggaattacatgtggaattgccttcggaatcatctgcgga 165  Q
    |||||||||||||||||| ||   |||||||||||||| ||||| ||||||||  ||||| |||   || |||| ||||  ||||||||| | |||||||    
T  38415677 taactttcctgcggattggttctttttcctgaggatttccctgcggaaacagcaatgctgcggatcaacctgtgcaatttgcttcggaattacctgcgga 38415776  T
Q  166 atgctcgcgggaaacattcacgggcaggggcaacttctcacact-----------tttcctgcggaagtttgtccagtttccttaggaaatttcctcagg 254  Q
    ||| || | |||||||||||||| ||| || |||||||| ||||           |||||||||||| |||||||||| |||| ||| ||||||| || |    
T  38415777 atgttcacaggaaacattcacggccagagg-aacttctcccactctgaccaaaattttcctgcggaattttgtccagtatcctaaggcaatttccgcatg 38415875  T
Q  255 tacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttc 353  Q
    ||  |||| || |||||||||  | ||||| |||||||||||||| |  ||||||||| |||| ||| |||||||| ||||| | | || ||| ||||||    
T  38415876 taagtttcctgtggttcctaagttcctcaggaaacaattacccacgatggtattacctaggaaccttgatccttggcaaaattcgcagggaacgggtttc 38415975  T
Q  354 ctgcggaaatttcattataatccgcaggaaa 384  Q
    || ||||||||||| | ||||| ||||||||    
T  38415976 cttcggaaatttcagtttaatctgcaggaaa 38416006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 207 - 409
Target Start/End: Original strand, 9751873 - 9752076
Alignment:
Q  207 acttttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagta 305  Q
    ||||||||||||||  ||||||  ||||||||| | ||||||| ||||||  |||| ||| |||| | |||| ||||  ||||||||||| || || |||    
T  9751873 acttttcctgcggatttttgtcacgtttccttacgcaatttccgcaggtaagtttcctgcagttcttcaaatcctcatgaaacaattaccaacgaaggta 9751972  T
Q  306 ttacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggagt 405  Q
    ||||||||  | |||||||||||| ||||| | | | |||||||||| ||| |||| ||||| | |||||| || ||||||||| |||||||||| ||||    
T  9751973 ttacctggataccttaatccttggcaaaattcgcagaaaacaggttttctgtggaattttcagtttaatccacatgaaattccgcaggaaaatcgagagt 9752072  T
Q  406 ttct 409  Q
    ||||    
T  9752073 ttct 9752076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 8691424 - 8691352
Alignment:
Q  66 taactttcctgcggattgattaagtttcctgaggattttcctgctgaaacagctttgctggggaattacatgt 138  Q
    |||||||||||  ||||| || |||||||| ||||||||||||| |||||| ||||| || ||||||||||||    
T  8691424 taactttcctgtagattgtttcagtttcctaaggattttcctgccgaaacaactttgttgtggaattacatgt 8691352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 16114245 - 16114345
Alignment:
Q  263 tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaa 362  Q
    ||||||||||||||| || || ||||| |||||||| || |||||| ||||||| || |||||||| ||||  || | ||||| || |||||||||||||    
T  16114245 tgcggttcctaaaatccttaggaaacagttacccacaaaggtattagctgggaacctgaatccttgataaatgccgcaggaaaaagctttcctgcggaaa 16114344  T
Q  363 t 363  Q
    |    
T  16114345 t 16114345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 28839809 - 28839922
Alignment:
Q  271 ctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcatta 370  Q
    |||||||| | || ||||||||| |||| || ||||||| ||| || || |||| | || ||||| ||| ||||||||||||  |||||||| ||||| |    
T  28839809 ctaaaattttaaggaaacaattatccacaaaggtattacatggaaacctaaatcttaggcaaaattcacaggaaacaggttttatgcggaaacttcatca 28839908  T
Q  371 taatccgcaggaaa 384  Q
     |||||||||||||    
T  28839909 aaatccgcaggaaa 28839922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 34486030 - 34486143
Alignment:
Q  303 gtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcggg 402  Q
    |||||| |||||||||| ||||||||| ||| |||||  ||||  | ||||||||||| |||||  |  |||||| ||| ||||||| |||| |||||      
T  34486030 gtattagctgggaaactgaatccttggcaaattccacatgaaaaggctttcctgcggacatttccctgaaatccgtaggtaattccgcaggacaatcgaa 34486129  T
Q  403 agtttctagtaatg 416  Q
    ||||||||||||||    
T  34486130 agtttctagtaatg 34486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 35531829 - 35531755
Alignment:
Q  285 aaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcgg 359  Q
    ||||||||||||||  |  ||||||||||||| || ||||||||||||| |||   ||||||| |||||||||||    
T  35531829 aaacaattacccacgcagatattacctgggaacctaaatccttggtaaactccgtaggaaacacgtttcctgcgg 35531755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 13654765 - 13654814
Alignment:
Q  288 caattacccactaaagtattacctgggaaacttaatccttggtaaaatcc 337  Q
    ||||||||||| || |||||||||||||| || ||||||||| |||||||    
T  13654765 caattacccacgaaggtattacctgggaacctaaatccttggcaaaatcc 13654814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 413
Target Start/End: Original strand, 1319071 - 1319222
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||||||||||||| ||||| |||||||||||||| || |||||| ||||||| || ||||||||  ||| ||| | ||||| |  ||||||||||||    
T  1319071 ctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattagctgggaacctgaatccttgacaaattccgcaggaaataactttcctgcggaa 1319170  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
    || |   |||| ||| |||| ||||||| |||||| ||| ||||||||||||    
T  1319171 atatacctatattccacaggtaattccgcaggaaattcgagagtttctagta 1319222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 400
Target Start/End: Original strand, 4245766 - 4245904
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaactt-aatccttggtaaaatccactggaaacaggtttcctgcgga 360  Q
    |||||||| ||||||| ||||| |||||||||||||| || ||  ||||| |||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  4245766 ctgcggttactaaaatcctcaggaaacaattacccacgaaggttatacct-ggaaacttaaatccttggtaaaatccgcaggaaacaggtgtcctgcgga 4245864  T
Q  361 aatttcattataatccgcaggaaattccgaaggaaaatcg 400  Q
    | |||||    |||||||||| ||||||| |||| |||||    
T  4245865 attttcacccaaatccgcaggtaattccgcaggataatcg 4245904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 411
Target Start/End: Complemental strand, 4293452 - 4293304
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||| ||| ||||||| || || |||||||||||||| || ||  |||||||||| || | ||||| | ||||||| | |||||  ||||||||||||||    
T  4293452 ctgcagtttctaaaatcctaaggaaacaattacccacaaaggttatacctgggaacctaagtccttagcaaaatccgcaggaaat-ggtttcctgcggaa 4293354  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctag 411  Q
    ||||||  | | |||||||   |||||| |||||||||| ||||||||||    
T  4293353 atttcaccaaactccgcagatgattccgcaggaaaatcgagagtttctag 4293304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 36870067 - 36869975
Alignment:
Q  269 tcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    ||||| ||||||||| ||| |||||||||| || ||||||| |||||| || ||||||||  |||||||   |||||| ||||||||||||||    
T  36870067 tcctagaattctcagcaaataattacccacgaaggtattacttgggaacctaaatccttgacaaaatccttaggaaacgggtttcctgcggaa 36869975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 32234017 - 32233953
Alignment:
Q  354 ctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagtaatgat 418  Q
    |||||||||||||| |  |||||||| ||||||||| ||||||| || |||||| ||||||||||    
T  32234017 ctgcggaaatttcaatgcaatccgcatgaaattccgcaggaaaaccgcgagtttttagtaatgat 32233953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4293617 - 4293554
Alignment:
Q  71 ttcctgcggattgattaagtttcctgaggattttcctgctgaaacagctttgctggggaattac 134  Q
    ||||||||||| |||  | |||||||||||||| |||||  |||||||||||||| ||||||||    
T  4293617 ttcctgcggatggatataatttcctgaggatttacctgcgaaaacagctttgctgcggaattac 4293554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 28714227 - 28714308
Alignment:
Q  210 tttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacatttctgcggttcctaaaattctcagtaaacaatt 292  Q
    |||||||||||  |||||||| |||||| ||||||||||| |||||  |||||   |||||||||||| ||||| ||||||||    
T  28714227 tttcctgcggatttttgtccaatttcctaaggaaatttccgcaggttgatttcctgggttcctaaaatcctcag-aaacaatt 28714308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 418
Target Start/End: Original strand, 18983683 - 18983829
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||||||||||||| ||||| |||||||||||||| || ||| |||||          |||||||| ||||||| | | ||||||||||||| |||||    
T  18983683 ctgcggttcctaaaatcctcaggaaacaattacccacgaaggtaatacct----------atccttggaaaaatccgcagaaaacaggtttcctacggaa 18983772  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagtaatgat 418  Q
    |||| | ||||| |||| |||||||||| |||||| ||| |||||||||||| ||||    
T  18983773 atttaagtataagccgctggaaattccgcaggaaactcgtgagtttctagtagtgat 18983829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 262 - 413
Target Start/End: Complemental strand, 26945822 - 26945671
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||||| ||||||| ||||| | ||||||||| || || ||  |||||||||| || ||||||||||||| |||   |||||||||||||||| ||||    
T  26945822 ctgcggttactaaaatcctcaggagacaattaccaacgaaggttatacctgggaacctaaatccttggtaaattccgtaggaaacaggtttcctgtggaa 26945723  T
Q  362 atttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
     |||||  |  ||||||||  ||||||| ||||| || | ||||||||||||    
T  26945722 ttttcaccaatatccgcagataattccgcaggaatattgagagtttctagta 26945671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 360
Target Start/End: Complemental strand, 17898818 - 17898718
Alignment:
Q  260 ttctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcgg 359  Q
    |||||||||||||||||| | ||| ||| |||||||||| || |||||||||||||     ||||||||| ||||||| | ||||||| |||||||||||    
T  17898818 ttctgcggttcctaaaatccacaggaaataattacccacgaaggtattacctgggagtgaaaatccttggcaaaatccgcaggaaacacgtttcctgcgg 17898719  T
Q  360 a 360  Q
    |    
T  17898718 a 17898718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 24674577 - 24674666
Alignment:
Q  272 taaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||| || || ||| |||||||||| || |||||||||||||| || ||||||||| ||||||| | |||||  ||||||| ||||||    
T  24674577 taaaatcctaaggaaataattacccacgaaggtattacctgggaacctcaatccttggcaaaatccgcaggaaatcggtttccagcggaa 24674666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 6132949 - 6132854
Alignment:
Q  272 taaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttca 367  Q
    |||||| ||||| |||||||||||||| || ||  |||||||||| || |||| |||||||| ||| | | |||||||||||||||||||||||||    
T  6132949 taaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatctttggtaaattccgcagaaaacaggtttcctgcggaaatttca 6132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 12317719 - 12317835
Alignment:
Q  88 agtttcctgaggattttcctgctgaaacagctttgct-ggggaattacatgtggaattgccttcggaatcatctgcggaatgctcgcgggaaacattcac 186  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||| || ||||||  |  |||||| | |||||| ||| | || ||||||||||||    
T  12317719 agtttcctgaggatttacctgccgcaacagctttgctgggggaattacctgaggaatttgcagcggaattacctgcggtatgtttgcaggaaacattcac 12317818  T
Q  187 gggcaggggcaacttctc 204  Q
    ||||||||| ||||||||    
T  12317819 gggcagggg-aacttctc 12317835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 412
Target Start/End: Complemental strand, 28753538 - 28753400
Alignment:
Q  274 aaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataa 373  Q
    |||| ||||| ||||||||||| || || |||||| | ||| | || || |||||| ||||||| ||| |||| |||||  ||||||||||| |  | ||    
T  28753538 aaatcctcagaaaacaattaccaacaaaggtattatcagggcacctaaagccttggcaaaatccgctgtaaactggttttatgcggaaattttaacaaaa 28753439  T
Q  374 tccgcaggaaattccgaaggaaaatcgggagtttctagt 412  Q
    |  ||||| ||||||| |||||||||| |||||||||||    
T  28753438 tatgcaggtaattccgcaggaaaatcgagagtttctagt 28753400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 20355724 - 20355675
Alignment:
Q  259 tttctgcggttcctaaaattctcagtaaacaattacccactaaagtatta 308  Q
    ||||||||||||||||||| ||||| |||||||||||||| || ||||||    
T  20355724 tttctgcggttcctaaaatcctcaggaaacaattacccacaaaggtatta 20355675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 413
Target Start/End: Original strand, 12317857 - 12318061
Alignment:
Q  210 tttcctgcggaagtttgtccagtttccttaggaaatttcctcaggtacatttc-tgcggttcctaaaattctcagtaaacaattacccactaaagtatta 308  Q
    |||||||||||  ||  ||| ||||||| ||||||||||| |||||   |||| ||| | || |||||| ||||| |||||||||||||| || ||  ||    
T  12317857 tttcctgcggatattgttcccgtttcctgaggaaatttccgcaggttagtttcctgcagatcataaaatcctcaggaaacaattacccacgaaggttata 12317956  T
Q  309 cctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggagtttc 408  Q
    |||||||| || ||||||| | ||||||||  |||||   |||||||||| || |||||    ||| ||| || |||||||  ||||||||| ||| |||    
T  12317957 cctgggaacctaaatccttagcaaaatccataggaaatttgtttcctgcgaaattttcacctaaattcgccggtaattccgctggaaaatcgagagattc 12318056  T
Q  409 tagta 413  Q
    |||||    
T  12318057 tagta 12318061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 414
Target Start/End: Complemental strand, 15436100 - 15435991
Alignment:
Q  304 tattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcggga 403  Q
    |||||| |||||| || |||||| || ||||||| | |||||  | |||||||||||| |||||||| |||||| |||  |||||  |||||||| ||||    
T  15436100 tattacatgggaatctaaatcctaggcaaaatccgcaggaaattg-tttcctgcggaattttcattaaaatccgtaggcgattccacaggaaaattggga 15436002  T
Q  404 gtttctagtaa 414  Q
    |||||| ||||    
T  15436001 gtttcttgtaa 15435991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 38386618 - 38386553
Alignment:
Q  272 taaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatcc 337  Q
    ||||||||| || |||||||||||  | || |||||||||||||| || ||||||||| |||||||    
T  38386618 taaaattctaaggaaacaattaccttcgaaggtattacctgggaacctcaatccttggcaaaatcc 38386553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 12317683 - 12317711
Alignment:
Q  18 cttttggcattcattaatagaaaataaaa 46  Q
    |||||||||||||||||||||||||||||    
T  12317683 cttttggcattcattaatagaaaataaaa 12317711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 11514 - 11423
Alignment:
Q  322 atccttggtaaaatccactggaaacaggtttcctgcggaaatttcattataatccgcaggaaattccgaaggaaaatcgggagtttctagta 413  Q
    |||| ||| ||||||| ||||||||| |||||||||||||  | |||| | ||||||||||||| ||  |||||||||| ||||||||||||    
T  11514 atccatggcaaaatccgctggaaacaagtttcctgcggaatatacattgttatccgcaggaaatgccccaggaaaatcgtgagtttctagta 11423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 21077308 - 21077407
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||| ||||||||| ||||| || |||||| |||| || | |||||||||||| || ||||||||| ||||||| || ||||| | ||||||||||||    
T  21077308 ctgcggatcctaaaatcctcaggaatcaattaaccacgaaggcattacctgggaacctgaatccttgggaaaatccgcttgaaaccgttttcctgcggaa 21077407  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 11761436 - 11761510
Alignment:
Q  285 aaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcgg 359  Q
    |||||||||||||| || ||||||||| |||| || || |||||| ||||||| | |||||||||||| ||||||    
T  11761436 aaacaattacccacgaaggtattacctaggaacctaaaaccttggcaaaatccgcaggaaacaggtttgctgcgg 11761510  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 20743310 - 20743236
Alignment:
Q  69 ctttcctgcggattgattaagtttcctgaggattttcctgctgaaacagctttgctggggaattacatgtggaat 143  Q
    |||||||||||| |  || || ||||||||||||||||||| |||||||||||||||  ||||||| || |||||    
T  20743310 ctttcctgcggaatagttcagattcctgaggattttcctgccgaaacagctttgctgcagaattacctgaggaat 20743236  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 21053696 - 21053594
Alignment:
Q  263 tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaaa 362  Q
    ||||| |||||||||  |||| || ||||||||||| || ||||||| |||||| || |||| |||| ||||||| |  ||||| ||||||||||||| |    
T  21053696 tgcggatcctaaaatcgtcaggaatcaattacccacgaaggtattacttgggaacctgaatcattgggaaaatccgcatgaaactggtttcctgcggata 21053597  T
Q  363 ttt 365  Q
    |||    
T  21053596 ttt 21053594  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 21054043 - 21054141
Alignment:
Q  262 ctgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    |||||| |||||||||  |||| || ||||||||||  || | ||||||||| || || ||||||||| ||||||| || ||||| ||||||||||||||    
T  21054043 ctgcggatcctaaaatcgtcaggaatcaattacccatgaaggcattacctgg-aacctgaatccttgggaaaatccgcttgaaaccggtttcctgcggaa 21054141  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 31866505 - 31866431
Alignment:
Q  83 gattaagtttcctgaggattttcctgctgaaacagctttgctggggaattacatgtggaattgccttcggaatca 157  Q
    |||||||||||||||||| ||  |||| ||||||| ||||||| || ||||| || ||||||| || ||||||||    
T  31866505 gattaagtttcctgaggaattatctgcggaaacagttttgctgcggcattacctgcggaattggctgcggaatca 31866431  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 21076948 - 21076880
Alignment:
Q  269 tcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatcc 337  Q
    ||||||||| ||||| || ||||||||||| || ||||||| |||||| || |||| |||| |||||||    
T  21076948 tcctaaaatcctcaggaatcaattacccacgaaggtattacttgggaacctgaatcattgggaaaatcc 21076880  T

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Target: scaffold0127 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 28494 - 28592
Alignment:
Q  263 tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    ||||| ||||||||| ||||| || ||||||| ||| || |||||||||||||| || ||||||||| ||||||| |  ||||| | ||||||||||||    
T  28494 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaa 28592  T

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Target: scaffold0127; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 35400 - 35498
Alignment:
Q  263 tgcggttcctaaaattctcagtaaacaattacccactaaagtattacctgggaaacttaatccttggtaaaatccactggaaacaggtttcctgcggaa 361  Q
    ||||| ||||||||| ||||| || ||||||| ||| || |||||||||||||| || ||||||||| ||||||| |  ||||| | ||||||||||||    
T  35400 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaa 35498  T

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