View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_low_9 (Length: 518)
Name: NF7824_low_9
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 314 - 476
Target Start/End: Complemental strand, 49713096 - 49712934
Alignment:
| Q |
314 |
atccctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttc |
413 |
Q |
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| T |
49713096 |
atccctgcaattctttgacaccaagcttgcatttttatcatcgccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttc |
49712997 |
T |
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| Q |
414 |
ctttgcagttctctgggtagctttgttgagtcgcatccgaagaacagtctcacatcagtttgg |
476 |
Q |
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| T |
49712996 |
ctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttgg |
49712934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 314 - 476
Target Start/End: Complemental strand, 49655574 - 49655412
Alignment:
| Q |
314 |
atccctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttc |
413 |
Q |
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| T |
49655574 |
atccctgcaattctttgacaccaggcttgcatttttatcatcatcatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttc |
49655475 |
T |
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| Q |
414 |
ctttgcagttctctgggtagctttgttgagtcgcatccgaagaacagtctcacatcagtttgg |
476 |
Q |
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| T |
49655474 |
ctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttgg |
49655412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 49655784 - 49655654
Alignment:
| Q |
187 |
gagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcaaagccacaccttcctccggtg |
286 |
Q |
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| T |
49655784 |
gagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccacaccttcctccagtg |
49655685 |
T |
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| Q |
287 |
ctgttacacgcattgcaatcactagcaatcc |
317 |
Q |
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| T |
49655684 |
ctgttacactcattgcaatcactagctatcc |
49655654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 49713306 - 49713176
Alignment:
| Q |
187 |
gagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcaaagccacaccttcctccggtg |
286 |
Q |
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| T |
49713306 |
gagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagtg |
49713207 |
T |
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| Q |
287 |
ctgttacacgcattgcaatcactagcaatcc |
317 |
Q |
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| T |
49713206 |
ctgttacactcattgcaatcactagctatcc |
49713176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 28448784 - 28448730
Alignment:
| Q |
397 |
agcaaccaattgtgttcctttgcagttctctgggtagctttgttgagtcgcatcc |
451 |
Q |
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| T |
28448784 |
agcaaccgattgtgttcctttgcagcactctgagtagctttgttgagtcgcatcc |
28448730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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