View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7825_high_5 (Length: 248)
Name: NF7825_high_5
Description: NF7825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7825_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20278606 - 20278839
Alignment:
| Q |
1 |
aagaagtcacatgtagacaatcccatatttaaagtaaaatacatcataaacatcacctccata--ataaaactccaactacttccagcttcacttgtaaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20278606 |
aagaagtcacatgtagacaatcccatatttaaagtaaaatacatcataaacatcacctccatataataaaactccaactacttccagcttcacttgtaaa |
20278705 |
T |
|
| Q |
99 |
ttcattcctgtaaaaattaaataatgttgatgtgagtttaactatcttagctggtttccgaacacagaaaatcaaccttaactctagccataatttaaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20278706 |
ttcattcctgtaaaaattaaataatgttgatgtgagtttaactatcttagttggtttccgaacacagaaaatcaactttaactctagccataatttaaat |
20278805 |
T |
|
| Q |
199 |
tttaacctatcttacttatatttagagtacaaat |
232 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |
|
|
| T |
20278806 |
tttaacctatctaacttataattagagtacaaat |
20278839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University