View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7825_low_2 (Length: 378)
Name: NF7825_low_2
Description: NF7825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7825_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 829356 - 828994
Alignment:
| Q |
1 |
gaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgttctagcgtagtagaa |
100 |
Q |
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| T |
829356 |
gaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgttctagcgtagtagaa |
829257 |
T |
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| Q |
101 |
tttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatnnnnnnnnnnnnnnnnncaagccttatccaacta |
200 |
Q |
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| T |
829256 |
tttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatacaacaacaacaacaaccaagccttatccaacta |
829157 |
T |
|
| Q |
201 |
agtgggattcctctataccaaaagattaaatttgttttgcacatgcattcaatcaaaagttatatgctaacagtattttaaattaaattttaatagatca |
300 |
Q |
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| T |
829156 |
agtgggattcctctataccaaaagattaaatttgttttgcacgtgcattcaatcaaaagttatatgctaacagtattttaaattaaattttaatagatca |
829057 |
T |
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| Q |
301 |
aatccaaatttta---ttgttgttgttgttgtgctgcatgtagcattttgttttggaggaaaa |
360 |
Q |
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| T |
829056 |
aatccgaattttattgttgttgttgttgttgtgctgcatgtagcattttgttttggaggaaaa |
828994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 360
Target Start/End: Complemental strand, 835475 - 835364
Alignment:
| Q |
250 |
caatcaaaagttatatgctaacagtattt-taaattaaattttaatagatcaaatccaaattttattgttgttgttgttgtgctgcatgtagcattttgt |
348 |
Q |
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| T |
835475 |
caatcaaaagttttatgctaacaatatatataaattaaattttaataaatcaaatcctaaagttatttttgttgttgttgggctgctggtagcattttat |
835376 |
T |
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| Q |
349 |
tttggaggaaaa |
360 |
Q |
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| T |
835375 |
gttggaggaaaa |
835364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 21202239 - 21202297
Alignment:
| Q |
88 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
146 |
Q |
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| T |
21202239 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
21202297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 42201063 - 42201121
Alignment:
| Q |
88 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
146 |
Q |
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| T |
42201063 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
42201121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 37985029 - 37985061
Alignment:
| Q |
91 |
cgtagtagaatttgagcaaactactatttctac |
123 |
Q |
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| T |
37985029 |
cgtagtagaatttgagcaaactgctatttctac |
37985061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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