View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_high_1 (Length: 807)

Name: NF7826_high_1
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_high_1
NF7826_high_1
[»] chr4 (1 HSPs)
chr4 (19-708)||(54736463-54737152)


Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 19 - 708
Target Start/End: Original strand, 54736463 - 54737152
Alignment:
Q  19 cttgttcaatcaccggacctacaaattcaccctaaatccgtcaccggcgacgaaaccctctccgatctaaaacactctatcttccccaattcacaatcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54736463 cttgttcaatcaccggacctacaaattcaccctaaatccgtcaccggcgacgaaaccctctccgatctaaaacactctatcttccccaattcacaatcat 54736562  T
Q  119 ccttctacttcaccctcaacggaaaacctctctccgatgacaccaatttctccacctcccgaatcgcacctctttcaaccctagtccttcaatcacgcct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54736563 ccttctacttcaccctcaacggaaaacctctctccgatgacaccaatttctccacctcccgaatcgcacctctttcaaccctagtccttcaatcacgcct 54736662  T
Q  219 ccgtggtggcggtggagatggaggctctacatgtgccgagtcacgtgactgttacctcaagatgtacgcggagaagaaacccgataaggttgatccaaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54736663 ccgtggtggcggtggagatggaggctctacatgtgccgagtcacgtgactgttacctcaagatgtacgcggagaagaaacccgataaggttgatccaaac 54736762  T
Q  319 gagcagaggctatcgaaatggcagaactgcgcgttatcgaatgagcctttacgtgaaccgtgtgtgattgataagcttgggaatattttcaataaggaat 418  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54736763 gagcagaggctatcgaaatggcagaactgtgcgttatcgaatgagcctttacgtgaaccgtgtgtgattgataagcttgggaatattttcaataaggaat 54736862  T
Q  419 cattggtggaagcgttgttggggaagaagctgccgaaagagtttgggtatattaagggtttgaaggatatgattaaaattaagcttgaatctgttcctgg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54736863 cattggtggaagcgttgttggggaagaagctgccgaaagagtttgggtatattaagggtttgaaggatatgattaaaattaagcttgaatctgttcctgg 54736962  T
Q  519 tgaggatgatggtgctaagtttcggtgtcccgttgcggggcttgagtttaatggaaagtataagtttttcgcgcttaggaattgtgggcatgttttgagt 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54736963 tgaggatgatggtgctaagtttcggtgtcccgttgcggggcttgagtttaatggaaagtataagtttttcgctcttaggaattgtgggcatgttttgagt 54737062  T
Q  619 gctaaggctttgaaagaagttaaatcttcggcgtgtttggtttgtcatgaggaatttggtgagggggataagattgtgattaatgggaat 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54737063 gctaaggctttgaaagaagttaaatcttcggcgtgtttggtttgtcatgaggaatttggtgagggggataagattgtgattaatgggaat 54737152  T

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