View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_12 (Length: 525)
Name: NF7826_high_12
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 41810732 - 41811241
Alignment:
| Q |
1 |
ttgcggcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810732 |
ttgcggcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattc |
41810831 |
T |
|
| Q |
101 |
aaagtctgaaagaggaggttgggagaaaaaccctggagcaagagagacttatggaagataaagaaaatttaacgatgcgtataaggagtctggaattgga |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41810832 |
aaagtctgaaagaggaggttgagagaaaaaccctggagcaagagagacttacggaagataaagaaaatttaacgatgcatataaggagtctggaattgga |
41810931 |
T |
|
| Q |
201 |
gatgggcactataaagagcaaaagtagcgaagatgaagagcaaataaaggctaacatccaagtgattagtcatctgacacagcagaagttggagctacac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810932 |
gatgggcactataaagagcaaaagtagcgaagatgaagagcaaataaaggccaacatccaagtgattagtcatctgacacagcagaagttggagctacac |
41811031 |
T |
|
| Q |
301 |
gacagaatagcaaaattagagaaaatatcagatgagagagaatcggagttattagttttccaagataagcttaataaggcagaggaagaatgtttggttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41811032 |
gacagaatagcaaaattagagaaaatatcagatgagagagaatcggagttattagttttccaagataagcttaataaggcagaggaagaatgtttggttg |
41811131 |
T |
|
| Q |
401 |
taatatctacctgcaaggagcaaattaagattcataaagatgatcagctttccatgtataatgagatgcaaaaattaggtcagtcgatcgaaaagctgaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41811132 |
taatatctacctgcaaggagcaaattaagattcataaagatgatcagctttccatgtataatgagatgcaaaaattaggtcagtcgatcgaaaagctgaa |
41811231 |
T |
|
| Q |
501 |
attggagatg |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
41811232 |
attggagatg |
41811241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 41797543 - 41797817
Alignment:
| Q |
1 |
ttgcggcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| |
|
|
| T |
41797543 |
ttgcagcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccaagaaaattccgagtgttcaattcaaattc |
41797642 |
T |
|
| Q |
101 |
aaagtctgaaagaggaggttgggagaaaaaccctggagcaagagagacttatggaagataaagaaaatttaacgatgcgtataaggagtctggaattgga |
200 |
Q |
| |
|
|| ||||||| |||||| ||| |||||| ||||||| |||||||||||||||||||| | |||||||||||| | || |||| || ||||||| |||| |
|
|
| T |
41797643 |
aatgtctgaaggaggagtttgacagaaaatccctggaacaagagagacttatggaagacagagaaaatttaaccaggcagataaagaatctggaactgga |
41797742 |
T |
|
| Q |
201 |
gatgggcactataaagagcaaaagtagcgaagatgaagagcaaataaaggctaacatccaagtgattagtcatct |
275 |
Q |
| |
|
|||| | || || |||||||||| |||| |||| ||||||||||||| | | ||| |||||||||| |||||||| |
|
|
| T |
41797743 |
gatgagtaccattaagagcaaaaatagcaaagacgaagagcaaataaggaccaacgtccaagtgatcagtcatct |
41797817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 41797155 - 41797319
Alignment:
| Q |
6 |
gcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattcaaagt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||| |
|
|
| T |
41797155 |
gcaggaagtggagtctctacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccaagaaaattctgagtgttcaattcaaattcgaagt |
41797254 |
T |
|
| Q |
106 |
ctgaaagaggaggttgggagaaaaaccctggagcaagagagacttatggaagataaagaaaattt |
170 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||||||| |||||| | ||||||||| |
|
|
| T |
41797255 |
ctgaaagaggaggttgacagaaaatccctggaacaagagagacttacggaagacagagaaaattt |
41797319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University