View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_2 (Length: 691)
Name: NF7826_high_2
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_2 |
 | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0273 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0142 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 654; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 9 - 674
Target Start/End: Complemental strand, 20246727 - 20246062
Alignment:
| Q |
9 |
tggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246727 |
tggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattat |
20246628 |
T |
|
| Q |
109 |
gaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246627 |
gaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagcta |
20246528 |
T |
|
| Q |
209 |
acttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246527 |
acttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagt |
20246428 |
T |
|
| Q |
309 |
cgaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaagtctagcgaaaatttcttcatgttcatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
20246427 |
cgaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggactttcgacaagtctagcgaaaatttcttcatgttcatc |
20246328 |
T |
|
| Q |
409 |
tgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacct |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246327 |
tgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacct |
20246228 |
T |
|
| Q |
509 |
aacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20246227 |
aacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggta |
20246128 |
T |
|
| Q |
609 |
tatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccattagcaaag |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246127 |
tatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccattagcaaag |
20246062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 9 - 674
Target Start/End: Complemental strand, 22140711 - 22140046
Alignment:
| Q |
9 |
tggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140711 |
tggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattat |
22140612 |
T |
|
| Q |
109 |
gaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140611 |
gaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagcta |
22140512 |
T |
|
| Q |
209 |
acttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140511 |
acttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagt |
22140412 |
T |
|
| Q |
309 |
cgaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaagtctagcgaaaatttcttcatgttcatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
22140411 |
cgaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggactttcgacaagtctagcgaaaatttcttcatgttcatc |
22140312 |
T |
|
| Q |
409 |
tgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacct |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140311 |
tgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacct |
22140212 |
T |
|
| Q |
509 |
aacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22140211 |
aacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggta |
22140112 |
T |
|
| Q |
609 |
tatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccattagcaaag |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140111 |
tatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccattagcaaag |
22140046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 341 - 673
Target Start/End: Complemental strand, 25948369 - 25948035
Alignment:
| Q |
341 |
ttgctgaagtgattcagattacaagaaggacttttggcaag--tctagcgaaaatttcttcatgttcatctgcaaaaattgttggtactaatcaagcata |
438 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||| | |||| |||||| || ||| || ||||||||||||||||| || || ||||||||||||| | |
|
|
| T |
25948369 |
ttgctgaagtgaattagattacaagaaaaactttcgacaagaatctagcaaatattgctccatgttcatctgcaaaatatgatgatactaatcaagcaga |
25948270 |
T |
|
| Q |
439 |
tgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaacgtggaagatttgaattccctagtttta |
538 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
25948269 |
tgcaagttctgtaagactccatccaactcatggtttcatatgggaaagggagactctcgacacaacacctaatgtggaagatctgaattccctagtctta |
25948170 |
T |
|
| Q |
539 |
gggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggccatagtggctgac |
638 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||| |||||||| || ||| ||||||||||||| | | |||||| ||||||||| ||| ||||| |
|
|
| T |
25948169 |
gggaatgatgaagatggtcatcacatctaagcaagatgcttagaacagaataacggttgtttagccgtatcttgagataaagaaggccttagaggctggt |
25948070 |
T |
|
| Q |
639 |
atttagcaaaagatggttatgagaccattagcaaa |
673 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |
|
|
| T |
25948069 |
atttagcaaaagatggttaagaagccattagcaaa |
25948035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 476 - 626
Target Start/End: Complemental strand, 20195914 - 20195764
Alignment:
| Q |
476 |
atgtgggaaagggagactctcgacacagaacctaacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagt |
575 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| | |||||| || | | |||||||| ||||| ||||||||||||||||||| ||||| ||| ||| | |
|
|
| T |
20195914 |
atgtggaaaagggagactttcgacgcagaaccttatgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaat |
20195815 |
T |
|
| Q |
576 |
gcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggcc |
626 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| || |||||||||||||| |
|
|
| T |
20195814 |
gcttagagaaaaatcatggttgtttagccggagcattagattaagaaggcc |
20195764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 476 - 626
Target Start/End: Complemental strand, 22089937 - 22089787
Alignment:
| Q |
476 |
atgtgggaaagggagactctcgacacagaacctaacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagt |
575 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| | |||||| || | | |||||||| ||||| ||||||||||||||||||| ||||| ||| ||| | |
|
|
| T |
22089937 |
atgtggaaaagggagactttcgacgcagaaccttatgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaat |
22089838 |
T |
|
| Q |
576 |
gcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggcc |
626 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| || |||||||||||||| |
|
|
| T |
22089837 |
gcttagagaaaaatcatggttgtttagccggagcattagattaagaaggcc |
22089787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 16165307 - 16165245
Alignment:
| Q |
210 |
cttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgca |
272 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||| ||| || ||||||| ||||| ||||| |
|
|
| T |
16165307 |
cttcaacttgctcttaggaagagaatggatacatggaataagtgttgttccttcatctatgca |
16165245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 668
Target Start/End: Original strand, 11885340 - 11885995
Alignment:
| Q |
14 |
gtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaagg |
113 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
11885340 |
gtgctactgtcaatttgatgcctcagtccttactcaaaaggattgacaagaccgacaaagacttgaagcgtcataatgtaattctgtcaaattatgaagg |
11885439 |
T |
|
| Q |
114 |
aaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttc |
213 |
Q |
| |
|
||||| | |||||| |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
11885440 |
aaaggctagtcatttccttggtgctcttcaagtgagtctaacagtgggaattgtggtcagacaaa-tttgttcatggtagtcccatcgaaagctaacttc |
11885538 |
T |
|
| Q |
214 |
aacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtcgaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
11885539 |
aacttgttgttaggaagagaatggattcatgtgataggtgttgttccctcatccatgcatcaaagaatttcaatttggagagatgatgagacagtcgaaa |
11885638 |
T |
|
| Q |
314 |
acattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggc--aagtctagcgaaaatttcttcatgttcatctgc |
411 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||||||| | ||||||| | ||| ||| || ||| || ||||||||||||| |
|
|
| T |
11885639 |
acattgaggctgaccaaagctatgttcttgctgaagtgaatcagattacaagtaaaacttttgacaaaagcctaaaaaatattactccatgttcatctgc |
11885738 |
T |
|
| Q |
412 |
aaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaac |
511 |
Q |
| |
|
|||| ||||| || |||||||||| ||| ||||||||||||||| ||||||||||||||||||||| || ||||||| | || ||| ||||||| |
|
|
| T |
11885739 |
aaaatctgttgataataatcaagcagatgtgagttctgtaagactcaatccaactcatggtttcatgtggaaatgggagacgcatgatacataacctaat |
11885838 |
T |
|
| Q |
512 |
gtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatat |
611 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||||||||||||| ||| || |
|
|
| T |
11885839 |
gtggagaatctgaattccctagccttagggaatgatgaggatgatcatcacatctaagaaaaatgcatagaacaaaatcacggttgtttagccggagcat |
11885938 |
T |
|
| Q |
612 |
gagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccatta |
668 |
Q |
| |
|
||||| ||||||||| ||||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
11885939 |
gagatcaagaaggccttagtggcgagcagttagcaaaagatggttaagagaccatta |
11885995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 230 - 657
Target Start/End: Original strand, 19885817 - 19886247
Alignment:
| Q |
230 |
gagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatt-tcaatttgaagagatgatggtacagtcgaaaacattgaggctaacc |
328 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| |||||||| ||||| ||||||| ||||||||| ||| |
|
|
| T |
19885817 |
gagagtggattcatgggataggcgctgttccctcatccatgcattaaagaaatctcaatttggagagatgacggtacggtcgaaattattgaggctgacc |
19885916 |
T |
|
| Q |
329 |
aaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaag--tctagcgaaaatttcttcatgttcatctgcaaaaattgttggtac |
426 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| ||||| | |||| |||||| || ||| || ||||||||||||||||| | || ||| |
|
|
| T |
19885917 |
aaagctattttcttgctgaagtgaatcatattacaagaaaaactttcgacaagaatctagcaaatattgctccatgttcatctgcaaaatcttatgatac |
19886016 |
T |
|
| Q |
427 |
taatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaacgtggaagatttgaat |
526 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
19886017 |
taatcaagcagatgcaagttctgtaagacaacatccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaatgccgaagatctgaat |
19886116 |
T |
|
| Q |
527 |
tccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggcc |
626 |
Q |
| |
|
|||||| | |||||||||||||| | |||| ||||||| |||| | |||||| || ||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
19886117 |
tccctactcttagggaatgatgaatacagtcatcacatctaggcaagattcttagaacataatcacggttgtttagccggatcttgagataaagaaggcc |
19886216 |
T |
|
| Q |
627 |
atagtggctgacatttagcaaaagatggtta |
657 |
Q |
| |
|
||||||||| |||||||||| |||||||| |
|
|
| T |
19886217 |
ctagtggctggtatttagcaaatgatggtta |
19886247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 14930174 - 14930033
Alignment:
| Q |
130 |
cttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaa |
229 |
Q |
| |
|
|||||||||||| |||||| ||| || |||||| |||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||| | || | | |
|
|
| T |
14930174 |
cttggtgctctcaaagtgaatctcactgtgggatctgtcaccagaccaactttgttcatggtagttccatcaaaagccaacttcaatttgctcctatgga |
14930075 |
T |
|
| Q |
230 |
gagaatggattcatgggataggtattgttccctcatccatgc |
271 |
Q |
| |
|
|||||||||| |||| ||| ||| ||||||| ||||| |||| |
|
|
| T |
14930074 |
gagaatggatacatgtgattggtgttgttccttcatctatgc |
14930033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 18474242 - 18474316
Alignment:
| Q |
182 |
tgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattg |
256 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||| ||| | |||| ||||||||||| ||||| || ||||||| |
|
|
| T |
18474242 |
tgttcatggtagttccatagaaagctaatttcaaattgatcctagggagagaatggatacatggaattggtattg |
18474316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 125 - 534
Target Start/End: Complemental strand, 25582646 - 25582235
Alignment:
| Q |
125 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgtt |
224 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
25582646 |
attccattggtgctatccaagtgagtctaacggtgggaactatggtcagaccaactttgttcatggtagtcccatcgaaagataacttccacttgttgtt |
25582547 |
T |
|
| Q |
225 |
aggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtcgaaaacattgaggct |
324 |
Q |
| |
|
||||||||||| ||||||||||| | || |||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
25582546 |
aggaagagaatagattcatgggacatgtgttgttccctcatccatgcctcaaagaatttcaatttggagagatgatgctacaggtgaaaacattgaggct |
25582447 |
T |
|
| Q |
325 |
aaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggc--aagtctagcgaaaatttcttcatgttcatctgcaaaaattgttg |
422 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||| || ||| | |||||| || ||||||| |||||| |
|
|
| T |
25582446 |
gaccaaagctattttcttgctgaagtgaatcagattacaagaaagacttttgacaaaagtctagcaaatattgatccatgtttatttgcaaaatttgttg |
25582347 |
T |
|
| Q |
423 |
gtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaacgtggaagattt |
522 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
25582346 |
gtactaatcaagcagatgcaagttctgtaagactccatccaactcatggtttcatgtggaaaagggagactctcaacacagaacctaatgcagaagattt |
25582247 |
T |
|
| Q |
523 |
gaattccctagt |
534 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25582246 |
gaattccctagt |
25582235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 10 - 600
Target Start/End: Original strand, 25567216 - 25567808
Alignment:
| Q |
10 |
ggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatg |
109 |
Q |
| |
|
||||||| || ||| ||| |||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||| ||||| |||| | ||||| |
|
|
| T |
25567216 |
ggtggtgatgttgttaatctgatgcctcaatccttactcaaaaaggttggaaagaccgacaaaaatttgaagcctcataatctaattatgtcgagttatg |
25567315 |
T |
|
| Q |
110 |
aaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaa |
209 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||| ||| | |||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25567316 |
aaggaaagggtggtcatttccttggtgcactcagagtatgcttaacggagggaaccatggttagaccaactttgttcatggtggtcccatcgaaagctaa |
25567415 |
T |
|
| Q |
210 |
cttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtc |
309 |
Q |
| |
|
||||||||| ||||| || || |||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||| |||||||||||||| ||| |
|
|
| T |
25567416 |
cttcaacttattgttggggagggaatggattcatgggataggcgttgttcccacatccatgcatcaaagaatcttaatttggagagatgatggtacggtc |
25567515 |
T |
|
| Q |
310 |
gaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaag--tctagcgaaaatttcttcatgttcat |
407 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||| | ||| || ||||| | ||||||| |||| | |||| || ||| || ||||||||| |
|
|
| T |
25567516 |
gaaaacattgaggatgaccatggctattttcttgctgaagtaaatcaaatcacaaggaaaacttttgacaagaatttagcaaatattgctccatgttcat |
25567615 |
T |
|
| Q |
408 |
ctgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacc |
507 |
Q |
| |
|
|||||||| | ||||| ||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||| || || |
|
|
| T |
25567616 |
ctgcaaaatctaatggtaaaaatcaagcagatgcaagttttgtgagactccgtccaactcatggtttcatgtgggaaagggagacattcgatacgaaatt |
25567715 |
T |
|
| Q |
508 |
taacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgttt |
600 |
Q |
| |
|
| | ||||| || ||||||||||| |||||||||| ||| |||||||| |||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
25567716 |
tgatatggaaaatctgaattccctaaccttagggaatgctgaagatgatcaccacatctaagcaagattcttagagctgaatcacggttgttt |
25567808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 24988253 - 24988504
Alignment:
| Q |
9 |
tggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattat |
108 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||| |||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
24988253 |
tggtggtgctgctgtcaatctgatgcctcaatccctacttaaaaggattggcaagaccgacaaagattttaagcctcataatgtaattcaatcaaattat |
24988352 |
T |
|
| Q |
109 |
gaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagcta |
208 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| | |||| ||||||||| |||||||| |||| ||| ||||||| |
|
|
| T |
24988353 |
gtaggaaaggctggtcattcccttggtgctcttcaagtgagtctaatggtgggaactttagtcataccaacttttttcatggtggtcctatccaaagcta |
24988452 |
T |
|
| Q |
209 |
acttcaacttgttgttaggaagagaatggattcatgggataggtattgttcc |
260 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
24988453 |
acttcaacttgttgttaggaagagagtggattcatgggataggcgttgttcc |
24988504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 536 - 673
Target Start/End: Complemental strand, 25579071 - 25578934
Alignment:
| Q |
536 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggccatagtggct |
635 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||| | |
|
|
| T |
25579071 |
ttagggaatgatgaggatgatcatcacatctatgcaaaatgcttggagcaaaaccacggttgtttagccagagtatgagattaaaaaggccatagtggtt |
25578972 |
T |
|
| Q |
636 |
gacatttagcaaaagatggttatgagaccattagcaaa |
673 |
Q |
| |
|
| || ||| ||||||||||||| || |||||||||||| |
|
|
| T |
25578971 |
ggcagttaacaaaagatggttaagaaaccattagcaaa |
25578934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 18754051 - 18754146
Alignment:
| Q |
255 |
tgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtcgaaaacattgaggctaaccaaagctattttcttgctgaagt |
350 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||| || || |||||||||| |||||||| || || || | |||||||||||||| |||||||| |
|
|
| T |
18754051 |
tgttccttcatctatgcattagagaatttcaatatggagggatgatggtatggtcgaaaatatagaagcagatcaaagctattttctggctgaagt |
18754146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 657
Target Start/End: Complemental strand, 4598959 - 4598291
Alignment:
| Q |
10 |
ggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatg |
109 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
4598959 |
ggtggtgctgctgtcaatatgatgcctcaatctttactcaaaaggattggcaagactgacaatgatttgaagcctcatactgtgattctgtcaaattatg |
4598860 |
T |
|
| Q |
110 |
aaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaa |
209 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
4598859 |
aaggaaaggctggtcattttcttggtgctctccaaatgagcctaacggtgggaaccatggttagaccaactttattcatggtggtcccttcgaaggctaa |
4598760 |
T |
|
| Q |
210 |
cttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtc |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
4598759 |
cttcaacttgttgttagggagagaatggattcatgggataggcgttgttccctcatccatgcaccaaagaatctcaatttggagagatgatggtatagtc |
4598660 |
T |
|
| Q |
310 |
gaaaaca------------------ttgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaag--tctagcga |
389 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||| |||||| ||| |||||||| | ||||| | |||| | |||||| |
|
|
| T |
4598659 |
gaaaacattgatatagtcgaaaacattgaggctgatcaaagctattttcttgctaaagtgaatcaaattacaaggaaaactttcgacaagaatttagcga |
4598560 |
T |
|
| Q |
390 |
aaatttcttcatgttcatctgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaaggga |
489 |
Q |
| |
|
| ||| || ||||||||||||||||| || || | |||||||| |||||||||||||| | | ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4598559 |
atattgctccatgttcatctgcaaaatctgatgatgctaatcaaacatatgcaagttctatgaaactccatccaactcatggtttcatgtggaaaaggga |
4598460 |
T |
|
| Q |
490 |
gactctcgacacagaacctaacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaat |
589 |
Q |
| |
|
||| || ||||| || | | |||||||| ||||||||||| |||||||||||| ||||||||| | |||||||||||| ||||||||| ||| |
|
|
| T |
4598459 |
gacattctacacataatttgatatggaagatatgaattccctaaccttagggaatgataaggatgatcgtcacatctaagcaaggtgcttagaattgaat |
4598360 |
T |
|
| Q |
590 |
cacggttgt-ttagctggaatatgagattaagaaggccatagtggctgacatttagcaaaagatggtta |
657 |
Q |
| |
|
||||||||| ||||||||| | |||||| || |||||| ||||||||| | ||| |||||||||||| |
|
|
| T |
4598359 |
cacggttgtgttagctggagtgtgagatcaaaaaggccttagtggctggtacttataaaaagatggtta |
4598291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 536 - 666
Target Start/End: Complemental strand, 17019828 - 17019698
Alignment:
| Q |
536 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggccatagtggct |
635 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
17019828 |
ttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggccttagtggct |
17019729 |
T |
|
| Q |
636 |
gacatttagcaaaagatggttatgagaccat |
666 |
Q |
| |
|
| || |||| |||||||||||| |||||||| |
|
|
| T |
17019728 |
ggcagttagaaaaagatggttaagagaccat |
17019698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 18218363 - 18218442
Alignment:
| Q |
17 |
ctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaatt |
96 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
18218363 |
ctgctgtcaatctgatgcctcaatccttactcaaaaggattgacaagaccgacaaagatttgaaacctcataacgtaatt |
18218442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 10 - 668
Target Start/End: Complemental strand, 2284058 - 2283417
Alignment:
| Q |
10 |
ggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatg |
109 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
2284058 |
ggtggtgccgctgtcaatctgatgcctcaatccttactcaaaaggattggtaagaccgacaaagatttgaagccgcataatgtgattttgtcgaattatg |
2283959 |
T |
|
| Q |
110 |
aaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaa |
209 |
Q |
| |
|
||||||||| | || |||| |||| |||||| ||||| || |||| ||||||||| |||| ||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
2283958 |
aaggaaaggcttgtaattcacttgatgctcttcaagtaagcttaacagtgggaactctggttagaacaactttgttcatggtggtcccatcgaaaactaa |
2283859 |
T |
|
| Q |
210 |
cttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtc |
309 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||||| |||||||| | ||||| ||||| |||||||| ||| |
|
|
| T |
2283858 |
cttcaagttgttgt-------------------tgggataggcgttgttccctcatccatgcaccaaagaatcttgatttggagagaggatggtacggtc |
2283778 |
T |
|
| Q |
310 |
gaaaacattgaggctaaccaaagctattttcttgctgaagtgattcagattacaagaaggacttttggcaag--tctagcgaaaatttcttcatgttcat |
407 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||| | ||| || ||||| | |||||||| |||| ||||| || ||| || ||||||||| |
|
|
| T |
2283777 |
aaaaatattgaggctgaccaaagctattttcttgccgaagtaagtcaaatcacaaggaagacttttgacaagaatctagaaaatattgctccatgttcat |
2283678 |
T |
|
| Q |
408 |
ctgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacc |
507 |
Q |
| |
|
|| ||||| ||| || | |||||||| | ||||||||||||| | ||||| |||||||||||||||||||||||||||||||| || |||| || |
|
|
| T |
2283677 |
cttcaaaacttgatgatggtaatcaagaagatgcaagttctgtgaaactccatccaactcatggtttcatgtgggaaagggagacgttctacacggagtt |
2283578 |
T |
|
| Q |
508 |
taacgtggaagatttgaattccctagttttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctgga |
607 |
Q |
| |
|
| | |||||||| ||||||||||| ||||| ||||| | ||| ||||| |||||||||||| || ||| | | |||||||||||||||| ||| |
|
|
| T |
2283577 |
tgatatggaagatatgaattccctaaccttaggaaatgacaaagataatcatcacatctaagcaagatgattataactggatcacggttgtttagccgga |
2283478 |
T |
|
| Q |
608 |
atatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccatta |
668 |
Q |
| |
|
| |||||| || |||||| ||||||||| | ||| || ||||||||| |||||||||| |
|
|
| T |
2283477 |
gtgtgagatcaaaaaggccttagtggctggtgtgtagtaagagatggttaggagaccatta |
2283417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 16052796 - 16052597
Alignment:
| Q |
124 |
cattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||| || | ||||||||||||| ||| || |||||||||||||||||||||||| | | |
|
|
| T |
16052796 |
cattcccttggtgctctccaagtgaatctaactgtggtaaccgttacgatgccaactttgttcaaggttgtaccatcgaaagctaacttcaacttgctct |
16052697 |
T |
|
| Q |
224 |
taggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtcgaaaacattgaggc |
323 |
Q |
| |
|
| |||| ||||||||| ||||| |||||| | |||| ||||| ||||||||||| || | ||| | || |||||||| | |||||||| |||||||| |
|
|
| T |
16052696 |
tgggaaaagaatggatacatggaataggtggttttccttcatctatgcatcaaaggatctaaatcttgagggatgatggcatggtcgaaaatattgaggc |
16052597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 657
Target Start/End: Complemental strand, 17136086 - 17135965
Alignment:
| Q |
536 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggccatagtggct |
635 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||| |||||||| ||||||| |||||||||| | ||| |||||| |||| ||||||||||||| |
|
|
| T |
17136086 |
ttagggaatgatgaaggtgatcatcacatctaagcaagatgcttagaatcaaatcacagttgtttagccgaaatgtgagatcaagagggccatagtggct |
17135987 |
T |
|
| Q |
636 |
gacatttagcaaaagatggtta |
657 |
Q |
| |
|
| | |||| |||||||||||| |
|
|
| T |
17135986 |
ggtacttagtaaaagatggtta |
17135965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 13277446 - 13277345
Alignment:
| Q |
171 |
cagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatg |
270 |
Q |
| |
|
|||||| || ||||||||||| || ||||| |||| |||||| |||||| | || ||||||||||| || ||||| ||||| |||||| ||||| ||| |
|
|
| T |
13277446 |
cagaccgacattgttcatggtggtaccatcaaaagataactttaacttgctcttgggaagagaatgcatacatggaataggggctgttccttcatctatg |
13277347 |
T |
|
| Q |
271 |
ca |
272 |
Q |
| |
|
|| |
|
|
| T |
13277346 |
ca |
13277345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 157 - 571
Target Start/End: Original strand, 111371 - 111787
Alignment:
| Q |
157 |
gtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattg |
256 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| || ||| |||||||||||||||||||| || |
|
|
| T |
111371 |
gtggaaactgtggttagaccaactttattcatggtggtcccatcaaaagctaacttcaacttattgttggggagacaatggattcatgggataggtgatg |
111470 |
T |
|
| Q |
257 |
ttccctcatccatgcatcaaagaatttcaatttgaagagatgatggtacagtcgaaaacattgaggctaaccaaagctattttcttgctgaagtgattca |
356 |
Q |
| |
|
||||||||||||||| ||||||||| || || || ||||||||||||| |||||| || ||||||| | |||||| |||||||||||||||||| | ||| |
|
|
| T |
111471 |
ttccctcatccatgcttcaaagaatctcgatctggagagatgatggtatagtcgagaatattgaggttgaccaaaactattttcttgctgaagtaaatca |
111570 |
T |
|
| Q |
357 |
gattacaagaaggacttttggcaag--tctagcgaaaatttcttcatgttcatctgcaaaaattgttggtactaatcaagcatatgcaagttctgtaaga |
454 |
Q |
| |
|
|| || || | ||| |||| |||| ||| || ||| | ||||||||| ||||||||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
111571 |
aatcacgaggaagacatttgacaagaacttagaaaatattgcaccatgttcatttgcaaaaattgatgatactaatcaagcagatgcaagttctgtgaag |
111670 |
T |
|
| Q |
455 |
ctccgcccaactcatggtttcatgtgggaaagggagactctcgacacagaacctaacgtggaagatttgaattccctagttttagggaatgatgaggatg |
554 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||||||||| || || |||| ||| || |||||||| ||| ||||||||||| |||| |
|
|
| T |
111671 |
ctccatccaactcatggcttcatgtgggaaagggagacgttcgacacagaatctgacatggaggatatggattccctaactttggggaatgatgaagatg |
111770 |
T |
|
| Q |
555 |
atcataacatctaagca |
571 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
111771 |
atcatcacatctaagca |
111787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 107189 - 107226
Alignment:
| Q |
124 |
cattcccttggtgctctccaagtgagtctaacggtggg |
161 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
107189 |
cattcccttggtgctctccaagtaagtctaatggtggg |
107226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 159 - 286
Target Start/End: Complemental strand, 34605 - 34478
Alignment:
| Q |
159 |
gggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgtt |
258 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
34605 |
gggaactatggtcagaccaactttgttcatggtagttgcatcgaaagctaacttcaacttgttgttaaaaagagaatggattcataagataggtgatgtt |
34506 |
T |
|
| Q |
259 |
ccctcatccatgcatcaaagaatttcaa |
286 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
34505 |
ccctcatccatgcatcaaagaatctcaa |
34478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 34701 - 34616
Alignment:
| Q |
25 |
aatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatga |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
34701 |
aatttgatgcatcaatccttactcaaaaggattggtaagaccggtaaggatttgaagcatcacaatgtaattctgtcaaattatga |
34616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 1694 - 1778
Alignment:
| Q |
399 |
catgttcatctgcaaaaattgttggtactaatcaagcatatgcaagttctgtaagactccgcccaactcatggtttcatgtggga |
483 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
1694 |
catgttcatctgcaaaagttgttggtactaatcaaggagatgcaagttctgtaagattccatccaactcatggtttcatgtggga |
1778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 21291 - 21163
Alignment:
| Q |
175 |
ccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatc |
274 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||||||| ||| | |||||||||||||||||||| | || ||| ||||||| ||||| ||||||| |
|
|
| T |
21291 |
ccaactttgttcatggtagtgccgttaaaagaaaacttcaatttgcttataggaagagaatggattcatagaattggtgttgttccttcatctatgcatc |
21192 |
T |
|
| Q |
275 |
aaagaatttcaatttgaagagatgatggt |
303 |
Q |
| |
|
||| | || |||||| |||||||||||| |
|
|
| T |
21191 |
aaaaagttgtaatttggagagatgatggt |
21163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 631
Target Start/End: Original strand, 80125 - 80220
Alignment:
| Q |
537 |
tagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttag-ctggaatatgagattaagaaggccatagt |
631 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||| |||||||| || ||||||| |||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
80125 |
tagggaatgacgaggatggtcatcacatctaagcaagatgcttagaacataatcacgattgtttagcctgaaatgtgagatcaagaaggccatagt |
80220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 15456 - 15314
Alignment:
| Q |
130 |
cttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaa |
229 |
Q |
| |
|
|||| ||||||| |||||| ||| | |||||| |||| |||||| |||||||||||||| || ||||| |||||||||||||||||| | || | | |
|
|
| T |
15456 |
cttgatgctctctaagtgaatctcattgtgggatctgttaccagaccgactttgttcatggtggtaccatcaaaagctaacttcaacttgctttttagta |
15357 |
T |
|
| Q |
230 |
gagaatggattcatgggataggtattgttccctcatccatgca |
272 |
Q |
| |
|
|| | ||||| ||||| |||||| ||||||| ||||| ||||| |
|
|
| T |
15356 |
gaaattggatacatggaataggttttgttccttcatctatgca |
15314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 668
Target Start/End: Complemental strand, 17989903 - 17989810
Alignment:
| Q |
575 |
tgcttagagcaaaatcacggttgtttagctggaatatgagattaagaaggccatagtggctgacatttagcaaaagatggttatgagaccatta |
668 |
Q |
| |
|
|||||||| || ||||| |||||||| || ||| | || ||| || |||||| || ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
17989903 |
tgcttagaacagaatcatggttgttttgccggagtgtgggatcaaaaaggccttattggctaacatttagcaaaagatggttaagagaccatta |
17989810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 20063350 - 20063522
Alignment:
| Q |
130 |
cttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgttcatggtagtcccatcgaaagctaacttcaacttgttgttaggaa |
229 |
Q |
| |
|
|||||||||||||||||||| || || || ||| ||| ||||||||||||||||| || || ||||| ||||| ||||| |||||| | ||||||| |
|
|
| T |
20063350 |
cttggtgctctccaagtgagcctcactgtaggatttgttactagaccaactttgttcatagtggtgccatcaaaagcaaactttaacttgcttttaggaa |
20063449 |
T |
|
| Q |
230 |
gagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagagatgatgg |
302 |
Q |
| |
|
| ||||| || ||||| || || || |||| ||||| |||||||| | | || |||||| ||||||||||| |
|
|
| T |
20063450 |
gggaatgcatacatggaattggcgttattccttcatctatgcatcagaaagttataatttggagagatgatgg |
20063522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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