View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_high_20 (Length: 400)
Name: NF7826_high_20
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 44191182 - 44191554
Alignment:
| Q |
9 |
agaatataacaactagattaagcattcaatgaaataactattaaatgataacagctgctattagtttccctcactacgtacttaccatccctctatcttt |
108 |
Q |
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| T |
44191182 |
agaatataacaactagattaagcattcaatgaaataactattaaatgataacagctgctattggtttccctcactacgtacttaccatccctctatcttt |
44191281 |
T |
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| Q |
109 |
ttcgtgtgaaaaatgtcgcactattcctctctcatatgttatgagttttgggaggttcaatgtagatgtgttgacactttcaattcaattttcaatttta |
208 |
Q |
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| T |
44191282 |
ttcgtgtgaaaaatgtcgcactattcctctctcatatgttatgagttttgggaggttcaatgtagatgtgttgacactttcaattcaattttcaatttta |
44191381 |
T |
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| Q |
209 |
cttatagcatacatatttcctatgaactttgaagcattaaaaaggcttcttaaaactatcagtaaagtactgatttaagaagacatatcagatgataaat |
308 |
Q |
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| T |
44191382 |
cttacagcatacatatttcctatgaactttgaagcattaaaaaggcgtcttaaaacaatcagtaaagtactgatttaagaagacatatcagatgataaat |
44191481 |
T |
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| Q |
309 |
ccagctaacagccatatagttggaaataacaaaggcctcattcaacagcttatttcgtggcttaaaatattga |
381 |
Q |
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| T |
44191482 |
ccagctaacagccatatagttggaaataacaaaggcctcattcaacagcttatttcgtggcttaaaatattga |
44191554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 44202577 - 44202655
Alignment:
| Q |
98 |
cctctatctttttcgtgtgaaaaatgtcgcactattcctctctcatatgtta-tgagttttgggaggttcaatgtagat |
175 |
Q |
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| T |
44202577 |
cctctatctttttcgcgtgacaaatgtcgcattattcctctctcatacgacattgagttttgggaggatcaacgtagat |
44202655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 44202747 - 44202827
Alignment:
| Q |
301 |
tgataaatccagctaacagccatatagttggaaataacaaaggcctcattcaacagcttatttcgtggcttaaaatattga |
381 |
Q |
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|||| ||||||||| ||| || ||||||| |||||||||||||| |||||| ||||||| |||||| |||||||| |||| |
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| T |
44202747 |
tgatcaatccagctgacaaccttatagttagaaataacaaaggcatcattctgcagcttaattcgtgacttaaaattttga |
44202827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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