View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_high_21 (Length: 400)

Name: NF7826_high_21
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_high_21
NF7826_high_21
[»] chr3 (2 HSPs)
chr3 (130-400)||(25727346-25727616)
chr3 (12-69)||(25727228-25727285)
[»] chr8 (8 HSPs)
chr8 (266-400)||(1801642-1801776)
chr8 (266-399)||(1777599-1777732)
chr8 (266-400)||(1784832-1784966)
chr8 (130-266)||(1801800-1801931)
chr8 (130-266)||(1784993-1785117)
chr8 (337-400)||(1772632-1772695)
chr8 (336-393)||(1768968-1769025)
chr8 (207-261)||(1777761-1777815)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 130 - 400
Target Start/End: Original strand, 25727346 - 25727616
Alignment:
Q  130 gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagcacattccta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25727346 gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagctcattccta 25727445  T
Q  230 attatagagatataatacattatcaagatgttgaaacttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25727446 attatagagatataatacattatcaagatgttgaaacttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatg 25727545  T
Q  330 gacctttccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25727546 gacctttccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttaca 25727616  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 25727228 - 25727285
Alignment:
Q  12 gaatatatcataatacaagtgtatccattttttattgaggcaattacacaagtgtatc 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25727228 gaatatatcataatacaagtgtatccattttttattgaggcaattacacaagtgtatc 25727285  T

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Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 1801776 - 1801642
Alignment:
Q  266 cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg 365  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  1801776 cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttg 1801677  T
Q  366 caactatgctgaaatcagctggtcataatgttaca 400  Q
    |||||||||| |||| |||||||||||||||||||    
T  1801676 caactatgcttaaattagctggtcataatgttaca 1801642  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 1777732 - 1777599
Alignment:
Q  266 cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg 365  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  1777732 cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttg 1777633  T
Q  366 caactatgctgaaatcagctggtcataatgttac 399  Q
    |||| ||| |||||||||||||||||||||||||    
T  1777632 caaccatgttgaaatcagctggtcataatgttac 1777599  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 1784966 - 1784832
Alignment:
Q  266 cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg 365  Q
    ||||||||||| |||||||||||||   ||| ||||||||| |||||||||||||||||||||||| ||  |||||||| ||||| ||||||||||||||    
T  1784966 cttctcttcttcattctttcattttctgttgatgttaatggaaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttg 1784867  T
Q  366 caactatgctgaaatcagctggtcataatgttaca 400  Q
    |||||||||| ||||||||||||||||||||||||    
T  1784866 caactatgcttaaatcagctggtcataatgttaca 1784832  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 1801931 - 1801800
Alignment:
Q  130 gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagcacattccta 229  Q
    ||||| ||||||||||||||||||||| ||||||||||||||  ||||| ||| ||||||||||||     |||||||||||| || |||| ||||||||    
T  1801931 gtctccaatattcaaaaggttagaacatttataattggtcaatgaccaaacacatatataaaggag-----ctaaaggtctatgtattagctcattccta 1801837  T
Q  230 attatagagatataatacattatcaagatgttgaaac 266  Q
    || |||||||||||||| |||||||| ||||| ||||    
T  1801836 atcatagagatataatatattatcaacatgtttaaac 1801800  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 1785117 - 1784993
Alignment:
Q  130 gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaa--gcacttatataaaggagctaagctaaaggtctatctactagcacattcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||              ||||||||||||||||||| ||||||    
T  1785117 gtctcaaatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatata--------------taaaggtctatctactagctcattcc 1785032  T
Q  228 taattatagagatataatacattatcaagatgttgaaac 266  Q
    |||| |||||||||||||| |||||||| ||||| ||||    
T  1785031 taatcatagagatataatatattatcaatatgtttaaac 1784993  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 1772695 - 1772632
Alignment:
Q  337 ccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttaca 400  Q
    |||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  1772695 ccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttaca 1772632  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 1769025 - 1768968
Alignment:
Q  336 tccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataa 393  Q
    ||||||||||||||| |||||||||||||||||||   || |||||||||||||||||    
T  1769025 tccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataa 1768968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 1777815 - 1777761
Alignment:
Q  207 gtctatctactagcacattcctaattatagagatataatacattatcaagatgtt 261  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||| || |||||    
T  1777815 gtctatctaatagctcattcctaattatagagatataatatattattaatatgtt 1777761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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