View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_high_29 (Length: 354)
Name: NF7826_high_29
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 36224188 - 36224517
Alignment:
| Q |
7 |
ttcgtgttggagcttggaatcctttcctcttcatatttttccaaacttagagtctctaataattgtagactgcaagatgttaaacatgtcgttgaacaac |
106 |
Q |
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| T |
36224188 |
ttcgtgttggagcttggaatcctttcctcttcatatttttccaaacttagagtctctaataattgtagactgcaagatgttaaacatgtcgttgaacaac |
36224287 |
T |
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| Q |
107 |
aaaagcccaattccaaaattgtggatgagacatttgtttattcaagattttccagggcttttgtcattgcctggatggattgaaggtgttgcagaaactt |
206 |
Q |
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| T |
36224288 |
aaaagcccaattccaaaattgtggatgagacatttgtttattcaagattttccagggcttttgtcattgcctggatggattgaaggtgttgcagaaactt |
36224387 |
T |
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| Q |
207 |
tagagatcttgctaatttatgaacttcctaatcttcagatgcttcctgagtgtctgacaacaatgactcatcttaaaaggctcgacattggtggttgcgc |
306 |
Q |
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| T |
36224388 |
tagagatcttgctaatttatgaacttcctaatcttcagacgcttcctgagtgtctgacaacaatgactcatcttaaaaggctcgacattggtggttgcgc |
36224487 |
T |
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| Q |
307 |
aaaactattgaaccttccaagtgacgtaac |
336 |
Q |
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| T |
36224488 |
aaaactattgaaccttccaagtgacgtaac |
36224517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 288
Target Start/End: Original strand, 36219014 - 36219275
Alignment:
| Q |
27 |
cctttcctcttcatatttttccaaacttagagtctctaataattgtagactgcaagatgttaaacatgtcgttgaacaacaaaagcccaattccaaaatt |
126 |
Q |
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| T |
36219014 |
ccttacctctttatatttttccaaatttacaaactttaataattatagactgcaagatgttagatttgtcgttgaacaacgaaagcccaatccaaaaatt |
36219113 |
T |
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| Q |
127 |
gtggatgagacatttgtttattcaagattttccagggcttttgtcattgcctggatggattgaaggtgttgcagaaactttagagatcttgctaatttat |
226 |
Q |
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| T |
36219114 |
gaggttgaaacatttgtttattagggattttccagggcttttgacattgcctggttggattgaaggtgctgcagaaactttagagaccttgttgatttat |
36219213 |
T |
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| Q |
227 |
gaacttcctaatcttcagatgcttcctgagtgtctgacaacaatgactcatcttaaaaggct |
288 |
Q |
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| T |
36219214 |
gaacttcctaatctaaagacgctttctcagcgtctgacaacattgactcatcttaaaaggct |
36219275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 18124230 - 18124070
Alignment:
| Q |
171 |
cattgcctggatggattgaaggtgttgcagaaactttagagatcttgctaatttatgaacttcctaatcttcagatgcttcctgagtgtctgacaacaat |
270 |
Q |
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|||||||| ||||| || | |||||||||| | |||||||| ||| |||||||| | |||| |||||| ||||||||||||||||||| |||||||| |
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| T |
18124230 |
cattgcctcgatgggttttaagtgttgcagacattttagagaccttagtaatttataattttccaaatcttgagatgcttcctgagtgtctaacaacaat |
18124131 |
T |
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| Q |
271 |
gactcatcttaaaaggctcgacattggtggttgcgcaaaactattgaaccttccaagtgac |
331 |
Q |
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| T |
18124130 |
gtctcatcttaaaaggctccatattggtaattgtcctaatctgttgaatcttccaagtgac |
18124070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 289
Target Start/End: Complemental strand, 18132761 - 18132504
Alignment:
| Q |
32 |
cctcttcatatttttccaaacttagagtctctaataattgtagactgcaagatgttaaacatgtcgttgaacaacaaaagcccaattccaaaattgtgga |
131 |
Q |
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|||||| ||||||| || || ||| || || |||||||| | ||||| |||||||||||| ||| ||||||||| |||| ||||| | || |||| ||| |
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| T |
18132761 |
cctctttatattttccctaaattacagactttaataatttttgactgtaagatgttaaacttgtatttgaacaacgaaagtccaatccgaagattgagga |
18132662 |
T |
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| Q |
132 |
tgagacatttgtttattcaagattttccagggcttttgtcattgcctggatggattgaaggtgttgcagaaactttagagatcttgctaatttatgaact |
231 |
Q |
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||| |||| ||| |||| |||||||||| |||| ||||| | |||| |||||||| ||||| | ||| |||||||||| |||| |||| || | | |
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| T |
18132661 |
tgaaacatctgtatattggggattttccagagcttctgtcacttcctgaatggattgtaggtgcttcagccactttagagaccttggaaattaataattt |
18132562 |
T |
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| Q |
232 |
tcctaatcttcagatgcttcctgagtgtctgacaacaatgactcatcttaaaaggctc |
289 |
Q |
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| T |
18132561 |
tctgaatcttgagatgttttcagaatgtttaacaacaatgtctcatcttaagaggctc |
18132504 |
T |
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