View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_3 (Length: 686)
Name: NF7826_high_3
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 5550208 - 5550564
Alignment:
| Q |
11 |
agcagagagggagattggatagttcaactgctttgtgctatgatataaggagttgaaggtctttgatcaaactcaaacgaaagaaaacaaattaatctaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5550208 |
agcagagagggagattggatagttcaactactttgtgctatgatataaggagttgaaggtctttgatcaaactcaaacgaaagaaaacaaattaatctaa |
5550307 |
T |
|
| Q |
111 |
caactaactactgatatttgctaatttttattttattttaaaaaagcttaa----gagagcaaagagtgacaagtatcaagtggaaaagatgtgtatgta |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5550308 |
caactaactactgatatttgctaattgttattttattttaaaaaagcttaattaagagagcaaagagtgacaagtatcaagtggaaaagatgtgtatgta |
5550407 |
T |
|
| Q |
207 |
ccttgcattatgatgaaggatgatttttataggttggagactgatggagtagctgttacaaacgacaaagcgccaaatttggatcaagtgatcattgaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5550408 |
ccttgcattatgatgaaggatgatttttataggtcggagactgatggagtggctgttacaaacgacgaagcgccaaatttggatcaagtgatcattgaag |
5550507 |
T |
|
| Q |
307 |
aattgttactagccgttgaggtgttaggagtccgagaggatctgacgctaggggaaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
5550508 |
aattgttactagccgttgaggtgttaggagtccgagaggatccgacgctaagggaaa |
5550564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 421 - 670
Target Start/End: Original strand, 5550568 - 5550816
Alignment:
| Q |
421 |
atgggtctttttgtggtgttaacccattgattttcaagnnnnnnncagctcagataatccgaagttcgatcgaaaggtaagtaaagtctgatgaaaaatt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
5550568 |
atgggtctttttgtggtgttaacccattgattttcaagaaaaaa-cagtttagataatccgaagttcgattgagaggtaagtaaagtctgataaaaaatt |
5550666 |
T |
|
| Q |
521 |
attttatcaagaaattaaattcagattcttctgaatattttatcattggtagagttcattaatcatttaatctcaattacgtaaatatgagtctttgatt |
620 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
5550667 |
attttatcaagaaattaaactcagagtcttttgaatattttatcattggtagagttcattaatcatttgatctcaattgcgtaaatatgagtccttgatt |
5550766 |
T |
|
| Q |
621 |
agtcgagaacgcctttatattgccacctcattaggcaccatgcaattacc |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5550767 |
agtcgagaacgcctttatattgccacctcattaggcaccatgcaattacc |
5550816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 15435563 - 15435674
Alignment:
| Q |
475 |
taatccgaagttcgatcgaaaggtaagtaaagtctgatgaaaaattattttatcaagaaattaaattcagattcttctgaatattttatcattggtagag |
574 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| | ||||||| ||| ||| | ||| ||||||| ||||| ||||||| ||| |||||||||||| |
|
|
| T |
15435563 |
taatccgaagttcgac--aaaggtaaataaagtctggttaaaaattgtttcatccaaaaaataaattcgaattctcctgaataatttgtcattggtagag |
15435660 |
T |
|
| Q |
575 |
ttcattaatcattt |
588 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
15435661 |
tccattaatcattt |
15435674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 9454481 - 9454569
Alignment:
| Q |
42 |
tttgtgctatgatataaggagttgaaggtctttga-tcaaactcaaacgaaagaaaacaaattaatctaacaactaactactgatattt |
129 |
Q |
| |
|
|||| |||| |||||||||||||||||||| | || ||||||||| | | |||| | | ||||||||||||||||| |||| |||||| |
|
|
| T |
9454481 |
tttgagctaagatataaggagttgaaggtcctggattcaaactcagagggaagagtaaatattaatctaacaactaaatactaatattt |
9454569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 32183268 - 32183228
Alignment:
| Q |
91 |
aagaaaacaaattaatctaacaactaactactgatatttgc |
131 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
32183268 |
aagaaaaaaaactaatctaacaactaactactaatatttgc |
32183228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 19161332 - 19161291
Alignment:
| Q |
483 |
agttcgatcgaaaggtaagtaaagtctgatgaaaaattattt |
524 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
19161332 |
agttcgttcgaaaggtaagtaaagtctgaccaaaaattattt |
19161291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 485 - 549
Target Start/End: Original strand, 16923955 - 16924019
Alignment:
| Q |
485 |
ttcgatcgaaaggtaagtaaagtctgatgaaaaattattttatcaagaaattaaattcagattct |
549 |
Q |
| |
|
|||||| | ||||||| |||||||| || ||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
16923955 |
ttcgattggaaggtaaataaagtctaataaaaaattattttatccaataatcaaattcagattct |
16924019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 543
Target Start/End: Complemental strand, 12768351 - 12768302
Alignment:
| Q |
494 |
aaggtaagtaaagtctgatgaaaaattattttatcaagaaattaaattca |
543 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||| | |||||||||||| |
|
|
| T |
12768351 |
aaggtaagtaaagtctgattaaaaattgtttcatccaaaaattaaattca |
12768302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University