View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_36 (Length: 294)
Name: NF7826_high_36
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 14545363 - 14545087
Alignment:
| Q |
11 |
gagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccaccaccagtgcagagatgactgagttgagtttcgatcttgttcagaaacg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14545363 |
gagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccacca---gtgcagagatgactgagttgagtttcgatcttgttcagaaacg |
14545267 |
T |
|
| Q |
111 |
ttttagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaagttg |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14545266 |
ttgtagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaagttg |
14545167 |
T |
|
| Q |
211 |
catttaatttatttattttcaataaaat-nnnnnnntaaatatatttttgtgttcgtgcgagcgaaacaaagaaagaaag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14545166 |
catttaatttatttattttcaataaaataaaaaaaatataaatatttttgtgttcgtgcaagcgaaacaaagaaagaaag |
14545087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University