View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_4 (Length: 658)
Name: NF7826_high_4
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 15 - 640
Target Start/End: Original strand, 38846276 - 38846891
Alignment:
| Q |
15 |
tcaaactttaccaagaatctctcagttggattataatttacataaaatcacttgatttgaaatctataaaattaaaaattttgaaggcatttttatatca |
114 |
Q |
| |
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| T |
38846276 |
tcaaactttaccaagaatctctcagttggattataatttacataaaatcacttgatttgaaatctataaaattaaaaattttgaaggcatttttttatca |
38846375 |
T |
|
| Q |
115 |
tcggttcaaataattactttctgcacaatgttgttgaaaaataattgtactcataattttaactcatgtatatttacttttagggtcaaactaaggcaac |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38846376 |
tcggttcaaataattactttctgcacaatgttgttgaaaaataattgtacttataattttaactcatgtatatttacttttacggtcaaactaaggcaa- |
38846474 |
T |
|
| Q |
215 |
taaaaatttcaaacaaataacgaatatttatctgctttcttccctataattacattaaaaagcttcatggtctagtggctgaatcctaataatagattct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38846475 |
------tttcaaacaaataacgaatatttatctgttttcttccctataattacattcaaaagcttcatggtctagtggctgaatcctaataatagtttcc |
38846568 |
T |
|
| Q |
315 |
ggcactgttaacataggtgg---tgcttccgatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgctttta |
411 |
Q |
| |
|
||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38846569 |
ggcaccggcaacataggaggcggtgcttccgatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgatttta |
38846668 |
T |
|
| Q |
412 |
gccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacacactc |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38846669 |
gccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactc |
38846768 |
T |
|
| Q |
512 |
tgtatccaaacttggtagtttcaactcagactcaattgaataacttactgttgggaatgtcttgagagctttcttcttgattcctttattgaccaattga |
611 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
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|
| T |
38846769 |
tgtatccaaagttggtagtttcaactcag------ttgaataacttactgttgggaatgtcttgagagctttcttcttgattcctttgttggcaaattga |
38846862 |
T |
|
| Q |
612 |
ggtgaagagttgatgctagaactcaaaga |
640 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
38846863 |
ggtgaagagttgatgctagaactcaaaga |
38846891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 169 - 640
Target Start/End: Original strand, 38826814 - 38827283
Alignment:
| Q |
169 |
aattttaactcatgtatatttact-tttagggtcaaactaaggcaactaaaaatttcaaacaaataacgaatatttatctgctttcttccctataattac |
267 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||| | |||||||| |||||||| | || || |||||||| |||||||||||||| |||| |
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|
| T |
38826814 |
aattttaactaatgtatatttacaatttaaggtcaaactatagtaactaaaagtttcaaactataaatgaccatttatctactttcttccctatagttac |
38826913 |
T |
|
| Q |
268 |
attaaaaagcttcatggtctagtggctgaatcctaataatagattctggcactgttaacataggtgg---tgcttccgatccaacaatctttcgacaagt |
364 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| || |||||||||||||||||||||||||||||| |
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| T |
38826914 |
attcaaaagcttcatggtctagtggctgaatcctaataatagtttccggcaccggcaacataggaggcggtgcttccgatccaacaatctttcgacaagt |
38827013 |
T |
|
| Q |
365 |
ctcaaggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38827014 |
ctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatg |
38827113 |
T |
|
| Q |
465 |
cgcaccttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaattgaataacttactgttg |
564 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
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|
| T |
38827114 |
cgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttttaactcag------ttgaataacttactgttg |
38827207 |
T |
|
| Q |
565 |
ggaatgtcttgagagctttcttcttgattcctttattgaccaattgaggtgaagagttgatgctagaactcaaaga |
640 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| |||||| |||| |
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|
| T |
38827208 |
gaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaggagttgctgctcgaactcgaaga |
38827283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 273 - 640
Target Start/End: Original strand, 38861319 - 38861683
Alignment:
| Q |
273 |
aaagcttcatggtctagtggctgaatcctaataatagattctggcactgttaacataggtggtg---cttccgatccaacaatctttcgacaagtctcaa |
369 |
Q |
| |
|
|||||||| || |||||||| | ||||| ||||||| ||||||||||| |||| | |||| ||| ||| ||| |||||||||||||||| |||| |
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|
| T |
38861319 |
aaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttgcacttgcgacccaccaatctttcgacaagtttcaa |
38861418 |
T |
|
| Q |
370 |
ggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatgcgcac |
469 |
Q |
| |
|
| || || ||||||||||| || |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||| |
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|
| T |
38861419 |
gaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaa |
38861518 |
T |
|
| Q |
470 |
cttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaattgaataacttactgttgggaat |
569 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| | | ||||| || | ||| || ||| |
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|
| T |
38861519 |
tttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcgg------tggaatagctcattgtaggaaat |
38861612 |
T |
|
| Q |
570 |
gtcttgagagctttcttcttgattcctttattgaccaattgaggtgaagagttgatgctagaactcaaaga |
640 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||| |||| |
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|
| T |
38861613 |
ttcttgagagctttcttcttgattcctttgttgaccaattgaggtgaattgttgttgcttgaactcgaaga |
38861683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 349 - 619
Target Start/End: Original strand, 38858524 - 38858788
Alignment:
| Q |
349 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatgatt |
448 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| || |
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|
| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
|
| Q |
449 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaatt |
548 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| |||| || |
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|
| T |
38858624 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcag------tt |
38858717 |
T |
|
| Q |
549 |
gaataacttactgttgggaatgtcttgagagctttcttcttgattcctttattgaccaattgaggtgaaga |
619 |
Q |
| |
|
|| || || ||||| || |||| ||| |||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
38858718 |
gagtagctcactgtgggaaatgccttaagagctttcttcttgattcctttattgaccgattgaggcgaaga |
38858788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 349 - 617
Target Start/End: Complemental strand, 38851118 - 38850856
Alignment:
| Q |
349 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatgatt |
448 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| || |
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|
| T |
38851118 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38851019 |
T |
|
| Q |
449 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaatt |
548 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| | | |
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|
| T |
38851018 |
gcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcgg------tg |
38850925 |
T |
|
| Q |
549 |
gaataacttactgttgggaatgtcttgagagctttcttcttgattcctttattgaccaattgaggtgaa |
617 |
Q |
| |
|
||||| || | ||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38850924 |
gaatagctcattgtaggaaatttcttgagagctttcttcttgattcctttgttgaccaattgaggtgaa |
38850856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 349 - 611
Target Start/End: Original strand, 38840786 - 38841042
Alignment:
| Q |
349 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatgatt |
448 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| || |
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|
| T |
38840786 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38840885 |
T |
|
| Q |
449 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaatt |
548 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| |||| || |
|
|
| T |
38840886 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcag------tt |
38840979 |
T |
|
| Q |
549 |
gaataacttactgttgggaatgtcttgagagctttcttcttgattcctttattgaccaattga |
611 |
Q |
| |
|
|| || || ||||| || |||| ||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38840980 |
gagtagctcactgtgggaaatgccttaagagctttcttcttgattcctttattgaccgattga |
38841042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 347 - 598
Target Start/End: Original strand, 38864851 - 38865096
Alignment:
| Q |
347 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcttttagccatttgtcgatgcaacgaacatggaaaccatga |
446 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || ||||||| |||| | |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38864851 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
38864950 |
T |
|
| Q |
447 |
ttgcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacacactctgtatccaaacttggtagtttcaactcagactcaa |
546 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38864951 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcag------ |
38865044 |
T |
|
| Q |
547 |
ttgaataacttactgttgggaatgtcttgagagctttcttcttgattccttt |
598 |
Q |
| |
|
|||||| || ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
38865045 |
ctgaatagctcactgtggggaatgttttgagagctttcttcttgattccttt |
38865096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 409 - 595
Target Start/End: Original strand, 43666059 - 43666239
Alignment:
| Q |
409 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaactctgagagacatatcacaca |
508 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || || |||| |||||| || || || || |||||||| || |||||||||||||| |
|
|
| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacaca |
43666158 |
T |
|
| Q |
509 |
ctctgtatccaaacttggtagtttcaactcagactcaattgaataacttactgttgggaatgtcttgagagctttcttcttgattcc |
595 |
Q |
| |
|
||| | |||||||| || | ||||| |||| || ||| ||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
43666159 |
ctccgagtccaaactcggcaatttcagctca---tc---tgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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