View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_42 (Length: 266)
Name: NF7826_high_42
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_42 |
 | |
|
| [»] scaffold0068 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0068 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 30148 - 30042
Alignment:
| Q |
45 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
30148 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
30049 |
T |
|
| Q |
145 |
tgtgctg |
151 |
Q |
| |
|
| ||||| |
|
|
| T |
30048 |
tatgctg |
30042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 29965 - 29883
Alignment:
| Q |
178 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29965 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgt |
29883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26970 - 26898
Alignment:
| Q |
1 |
ttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
74 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26970 |
ttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
26898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 21683762 - 21683868
Alignment:
| Q |
45 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
21683762 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
21683861 |
T |
|
| Q |
145 |
tgtgctg |
151 |
Q |
| |
|
| ||||| |
|
|
| T |
21683862 |
tatgctg |
21683868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42727121 - 42727214
Alignment:
| Q |
1 |
ttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctacta |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42727121 |
ttacttgatttgt-tagtatgtgcatttgaaccactatagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctacta |
42727214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 21683945 - 21684027
Alignment:
| Q |
178 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21683945 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgt |
21684027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21686940 - 21687012
Alignment:
| Q |
1 |
ttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
74 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21686940 |
ttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
21687012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University