View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_high_49 (Length: 241)

Name: NF7826_high_49
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_high_49
NF7826_high_49
[»] chr6 (34 HSPs)
chr6 (19-221)||(26655705-26655907)
chr6 (19-221)||(26761676-26761878)
chr6 (21-215)||(27718650-27718844)
chr6 (21-215)||(27698765-27698957)
chr6 (21-205)||(27725116-27725299)
chr6 (21-177)||(28786038-28786194)
chr6 (21-195)||(28780881-28781055)
chr6 (21-152)||(28792184-28792315)
chr6 (21-176)||(27604976-27605137)
chr6 (21-177)||(26802198-26802358)
chr6 (19-218)||(27338334-27338526)
chr6 (19-218)||(27399074-27399266)
chr6 (21-176)||(27228995-27229148)
chr6 (21-154)||(27611273-27611406)
chr6 (29-205)||(27678691-27678854)
chr6 (29-205)||(27706681-27706844)
chr6 (23-147)||(31284078-31284202)
chr6 (26-174)||(26823609-26823751)
chr6 (78-173)||(26055724-26055818)
chr6 (79-173)||(26048643-26048736)
chr6 (79-173)||(26069812-26069905)
chr6 (79-173)||(26075694-26075787)
chr6 (79-173)||(26142663-26142756)
chr6 (57-169)||(27427910-27428020)
chr6 (79-173)||(25481540-25481633)
chr6 (79-173)||(25538338-25538431)
chr6 (29-105)||(27593299-27593375)
chr6 (33-105)||(27677897-27677969)
chr6 (29-108)||(26622805-26622884)
chr6 (29-108)||(26728783-26728862)
chr6 (29-107)||(26861446-26861524)
chr6 (79-175)||(25579513-25579610)
chr6 (142-205)||(27593371-27593428)
chr6 (29-75)||(26884025-26884071)
[»] scaffold0349 (3 HSPs)
scaffold0349 (21-215)||(8072-8266)
scaffold0349 (21-215)||(14626-14818)
scaffold0349 (21-205)||(3693-3876)
[»] scaffold0277 (2 HSPs)
scaffold0277 (19-205)||(4940-5131)
scaffold0277 (21-195)||(13903-14077)
[»] chr4 (7 HSPs)
chr4 (21-221)||(18731762-18731961)
chr4 (21-221)||(18679825-18680024)
chr4 (21-172)||(18699658-18699807)
chr4 (21-178)||(18655735-18655890)
chr4 (21-110)||(18724343-18724432)
chr4 (57-169)||(17989344-17989454)
chr4 (57-169)||(18073535-18073645)
[»] scaffold1254 (1 HSPs)
scaffold1254 (21-187)||(188-347)
[»] scaffold0419 (1 HSPs)
scaffold0419 (21-187)||(7282-7441)
[»] chr1 (3 HSPs)
chr1 (21-136)||(28164620-28164735)
chr1 (21-131)||(28127938-28128042)
chr1 (67-110)||(268661-268704)
[»] scaffold0003 (1 HSPs)
scaffold0003 (57-169)||(59343-59453)
[»] chr8 (1 HSPs)
chr8 (67-103)||(29274087-29274123)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 26655907 - 26655705
Alignment:
Q  19 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655907 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 26655808  T
Q  119 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655807 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 26655708  T
Q  219 atg 221  Q
    |||    
T  26655707 atg 26655705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 26761878 - 26761676
Alignment:
Q  19 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26761878 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 26761779  T
Q  119 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26761778 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 26761679  T
Q  219 atg 221  Q
    |||    
T  26761678 atg 26761676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 27718650 - 27718844
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27718650 tgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggat 27718749  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaa 215  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||    
T  27718750 gaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtctttgataagtaactttataacaatgagaaaa 27718844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 27698765 - 27698957
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||| ||||||||||||  | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27698765 tgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggat 27698864  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaa 215  Q
    | |||||||||||| |||||||||||||||||||||||  ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27698865 g-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtgatgtgaagtctttgataagtaactttataacaaggagaaaa 27698957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 27725116 - 27725299
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||| ||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  27725116 tgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggat 27725215  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||    
T  27725216 gaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgttatgtgaagtctttgataagtaactttataac 27725299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 28786194 - 28786038
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  28786194 tgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggat 28786095  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 177  Q
    |||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||    
T  28786094 gaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgatg 28786038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 28781055 - 28780881
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | ||  || |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||| |||||    
T  28781055 tgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggat 28780956  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagta 195  Q
    |||||||||||||| |||| ||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  28780955 gaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgatttaaagtctttgataagta 28780881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 28792315 - 28792184
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  28792315 tgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggat 28792216  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaat 152  Q
    |||||||||||||| |||| ||||||||||||    
T  28792215 gaaaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 27604976 - 27605137
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagg------atgaggaaggtgattgtatagccatgagaattgagagaaa 114  Q
    ||||||||||||| ||||||||||||||  | ||  ||||||||||||||||||      ||||||||||| |||| |||||||||||||||||||||||    
T  27604976 tgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaa 27605075  T
Q  115 atggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgat 176  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27605076 ttggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgat 27605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 26802358 - 26802198
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || ||||| ||||||||||||||||||||||| || || |||||||||| ||||| |||||| |||||    
T  26802358 tgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggat 26802259  T
Q  121 gaa----aaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 177  Q
    |||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26802258 gaaaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 26802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 27338334 - 27338526
Alignment:
Q  19 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 118  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||   |    
T  27338334 aatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataag 27338433  T
Q  119 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 218  Q
    ||||||||| ||||||       |||||||||||||||||||||||||||||||||||||  |||||||  || | | || |||||||||||||||||||    
T  27338434 atgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatatggatctatataacaaggagaaaactt 27338526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 27399074 - 27399266
Alignment:
Q  19 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 118  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||   |    
T  27399074 aatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataag 27399173  T
Q  119 atgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaactt 218  Q
    ||||||||| ||||||       |||||||||||||||||||||||||||||||||||||  |||||||  || | | || |||||||||||||||||||    
T  27399174 atgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatatggatctatataacaaggagaaaactt 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 27229148 - 27228995
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||| ||||||||||||||  | || ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  27229148 tgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggat 27229049  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgat 176  Q
    |  ||||||||||  |||||||||||||||||||||| ||||||||||| ||||||    
T  27229048 g--aaaagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgtgat 27228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 27611273 - 27611406
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||||| || ||||||| | |||| |||||||||| |||||||||||| |||||    
T  27611273 tgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggat 27611372  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatga 154  Q
    |||||||||||||| |||||||||||||||||||    
T  27611373 gaaaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 27678854 - 27678691
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaag 128  Q
    ||||||||||| |||||||||||  || ||||||||| ||||| ||| |||||||||||||| |||||||||||| || ||||||| | |||||||||||    
T  27678854 aaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattagatgaaaaaag 27678755  T
Q  129 agtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    ||||||       |||||||||||||| ||||||||||||||||||     ||||||||| ||||||||||||||||    
T  27678754 agtttg-------agaatatgaatgag-aagtttttgtggtctgtg-----aagtctttgataagtaactttataac 27678691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 27706681 - 27706844
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaag 128  Q
    ||||||||||| |||||||||||  || ||||||||| ||||| ||| ||| |||||||||| |||||||||||| || ||||||| | |||||||||||    
T  27706681 aaactgaggaatacttggtatttgtactcataggaaattgaagtggaagagaaaggtgattgcatagccatgagattttagagaaattagatgaaaaaag 27706780  T
Q  129 agtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    ||||||       |||||||||||||| ||||||||||||||||||     ||||||||| ||||||||||||||||    
T  27706781 agtttg-------agaatatgaatgag-aagtttttgtggtctgtg-----aagtctttgataagtaactttataac 27706844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 31284202 - 31284078
Alignment:
Q  23 cccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatga 122  Q
    ||||| ||||| ||||| ||||||||||| ||  ||||||||| ||||||||| ||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  31284202 cccctgaaactaaggaatacttggtatttgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatggatga 31284103  T
Q  123 aaaaagagtttgggaatgcagaata 147  Q
    | ||||| |||| ||||||||||||    
T  31284102 agaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 26823751 - 26823609
Alignment:
Q  26 ctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaa 125  Q
    ||||||||||| |||||||||||||| ||  |||| |||| |||||||||      || ||| || ||||||||||||||||||||||| |||| ||| |    
T  26823751 ctaaaactgagaaacacttggtatttgaaatcatatgaaactgaagagga------agttgactgcatagccatgagaattgagagaaattggacgaaga 26823658  T
Q  126 aagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtg 174  Q
    ||||||||| |||||||||||||||||||||| |||  |||||| ||||    
T  26823657 aagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgtg 26823609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 26055818 - 26055724
Alignment:
Q  78 aggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26055724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26048736 - 26048643
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26048643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26069905 - 26069812
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26069812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26075787 - 26075694
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26142756 - 26142663
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26142663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 27427910 - 27428020
Alignment:
Q  57 cataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagt 156  Q
    |||||||||||||||||||  || ||||| |||| || ||||||||||||||||||||   ||||  | ||||||||| ||||||||||||||||||||     
T  27427910 cataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatatgaatgagg 27428007  T
Q  157 aagtttttgtggt 169  Q
    | |||||||||||    
T  27428008 atgtttttgtggt 27428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 25481633 - 25481540
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| ||||  |||||||||||| | ||||  |||| ||||||||||||||||| ||| ||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 25481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 25538431 - 25538338
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 173  Q
    |||||||||||| ||||||||||||||||| ||||  |||||||||||||| ||||  |||| ||||||||||||| ||| ||| ||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatgattaa-tttgtgtggtctgt 25538338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 27593299 - 27593375
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaat 105  Q
    ||||||||||| |||||||||||  |  ||||||||| ||||| ||| |||||||||||||| ||||||||||||||    
T  27593299 aaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 27677897 - 27677969
Alignment:
Q  33 tgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaat 105  Q
    ||||||| |||||||||||  || ||||||||| ||||| ||| |||||||||||||| ||||||||||||||    
T  27677897 tgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 26622884 - 26622805
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattga 108  Q
    ||||| ||||||||||||||||| ||   |||||||| ||||||||| ||||| |||||||| |||||||||| ||||||    
T  26622884 aaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26622805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 26728862 - 26728783
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattga 108  Q
    ||||| ||||||||||||||||| ||   |||||||| ||||||||| ||||| |||||||| |||||||||| ||||||    
T  26728862 aaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26728783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 26861524 - 26861446
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattg 107  Q
    ||||||||||| || |||||||| || ||||||||||  |||||||| ||| |||||||||| |||||||| |||||||    
T  26861524 aaactgaggaatacctggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 25579610 - 25579513
Alignment:
Q  79 ggaaggtgattgtatagccatgagaattgagagaaaatggatga--aaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtga 175  Q
    |||||||||||| ||||||||||||||||| ||||  |||||||  ||||| | ||||  |||| ||||||||||||||||| | | ||||||||||||    
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaataaaaaaactttgaaaatggagaatatgaatgagtaa-tgtgtgtggtctgtga 25579513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 27593371 - 27593428
Alignment:
Q  142 agaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    |||||||||||||| |||||||||||||||||||     |||||||| ||||||||||||||||    
T  27593371 agaatatgaatgag-aagtttttgtggtctgtga-----agtctttgataagtaactttataac 27593428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 26884071 - 26884025
Alignment:
Q  29 aaactgaggaacacttggtatttaaacccataggaaaatgaagagga 75  Q
    ||||||||||||||||||||  | || ||||||||||||||||||||    
T  26884071 aaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 26884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 8072 - 8266
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  8072 tgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggat 8171  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaa 215  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||    
T  8172 gaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtctttgataagtaactttataacaatgagaaaa 8266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 14626 - 14818
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||| ||||||||||||  | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  14626 tgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggat 14725  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataacaaggagaaaa 215  Q
    | |||||||||||| |||||||||||||||||||||||  ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  14726 g-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtgatgtgaagtctttgataagtaactttataacaaggagaaaa 14818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 3693 - 3876
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||| ||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  3693 tgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggat 3792  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||    
T  3793 gaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgttatgtgaagtctttgataagtaactttataac 3876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 4940 - 5131
Alignment:
Q  19 aatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatgg 118  Q
    ||||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  4940 aatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattgg 5039  T
Q  119 atgaaaaaagagtttgggaatgcagaatatgaat-----gagtaagtttttgtggtctgtgatgtaaagtctttggtaagtaactttataac 205  Q
    |||||||||||||||| |||| ||||||||||||     || ||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  5040 atgaaaaaagagtttgagaattcagaatatgaatttaatgaataagtttttgtggtctgtgatgtaaagtccttgataggtaactttataac 5131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 13903 - 14077
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||  | ||  || |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||| |||||    
T  13903 tgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggat 14002  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtctttggtaagta 195  Q
    |||||||||||||| |||| ||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  14003 gaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgatttaaagtctttgataagta 14077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 18731762 - 18731961
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||| || |||||||||||||||||  | || | ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||    
T  18731762 tgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggat 18731861  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgt-aaagtctttggtaagtaactttataacaaggagaaaactta 219  Q
    |||||||||||||| |||||||||||||||  |  |||||||||||||| |||||||| | ||||||  ||| |||||| ||||||||||||||||||||    
T  18731862 gaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtgatgtgagagtcttcagtatgtaactatataacaaggagaaaactta 18731959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 18679825 - 18680024
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||| || |||||||||||||||||  | || | |||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||| |||||    
T  18679825 tgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggat 18679924  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgt-aaagtctttggtaagtaactttataacaaggagaaaactta 219  Q
    |||||||||||||| |||||||||||||||  |  |||||||||||||| |||||||| | ||||||  ||| |||||| ||||||||||||||||||||    
T  18679925 gaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtgatgtgagagtcttcagtatgtaactatataacaaggagaaaactta 18680022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 18699658 - 18699807
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||| || |||||||||||||||||  | || | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||    
T  18699658 tgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagat 18699757  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctg 172  Q
    |||||||||||||| |||||||||||||||  |  |||||||||||||||||    
T  18699758 gaaaaaagagtttgagaatgcagaatatga--ggttaagtttttgtggtctg 18699807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 18655735 - 18655890
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||| || |||||||||||||||||  | || | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||    
T  18655735 tgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggat 18655834  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgt 178  Q
    |||||||||||||| |||||||||||||||  |  |||||||||||||| ||||||||    
T  18655835 gaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtgatgt 18655890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 18724343 - 18724432
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 110  Q
    ||||||| || |||||||||||||||||  | || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18724343 tgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 17989344 - 17989454
Alignment:
Q  57 cataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagt 156  Q
    |||||||||||||||||||  || ||||| |||| || ||||||||||||||||||||   ||||  | ||||||||| ||||||||||||||||||||     
T  17989344 cataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatatgaatgagg 17989441  T
Q  157 aagtttttgtggt 169  Q
    | |||||||||||    
T  17989442 atgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 18073645 - 18073535
Alignment:
Q  57 cataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagt 156  Q
    |||||||||||||||||||  || ||||| |||| || ||||||||||||||||||||   ||||  | ||||||||| ||||||||||||||||||||     
T  18073645 cataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatatgaatgagg 18073548  T
Q  157 aagtttttgtggt 169  Q
    | |||||||||||    
T  18073547 atgtttttgtggt 18073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 188 - 347
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||| ||||||||||||||  | ||  |||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||    
T  188 tgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagat 287  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtcttt 187  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||  |||||||    
T  288 gaaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatgtggagtcttt 347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 7441 - 7282
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||| ||||||||||||||  | ||  |||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||    
T  7441 tgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagat 7342  T
Q  121 gaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatgtaaagtcttt 187  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||  |||||||    
T  7341 gaaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatgtggagtcttt 7282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 28164620 - 28164735
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||||||||||||||||||||||||| | || |||||||||| ||||||||| |||||| | ||| ||||||||||||||||||| ||||| |||||    
T  28164620 tgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggat 28164719  T
Q  121 gaaaaaagagtttggg 136  Q
    || |||||||||||||    
T  28164720 gagaaaagagtttggg 28164735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 28127938 - 28128042
Alignment:
Q  21 tgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggat 120  Q
    ||||||| || |||||||||||||||||| | || |||||||||| ||||      |||||| ||||||| ||||||||||||||||| | ||| |||||    
T  28127938 tgcccctgaagctgaggaacacttggtatgtgaatccataggaaattgaa------gaggaatgtgattgcatagccatgagaattgacaaaaattggat 28128031  T
Q  121 gaaaaaagagt 131  Q
    || ||||||||    
T  28128032 gagaaaagagt 28128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 268661 - 268704
Alignment:
Q  67 tgaagaggatgaggaaggtgattgtatagccatgagaattgaga 110  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||    
T  268661 tgaagaggaagaggaaggtgattgcatagccatgagaactgaga 268704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 59453 - 59343
Alignment:
Q  57 cataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagt 156  Q
    |||||||||||||||||||  || ||||| |||| || ||||||||||||||||||||   ||||  | ||||||||| ||||||||||||||||||||     
T  59453 cataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatatgaatgagg 59356  T
Q  157 aagtttttgtggt 169  Q
    | |||||||||||    
T  59355 atgtttttgtggt 59343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 29274087 - 29274123
Alignment:
Q  67 tgaagaggatgaggaaggtgattgtatagccatgaga 103  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  29274087 tgaagaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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