View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_high_62 (Length: 206)
Name: NF7826_high_62
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_high_62 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 3888920 - 3888753
Alignment:
| Q |
18 |
ctaacattaaaggttcccccgtagatagggagataaagtaaatttagttatgcccaaaagcttatatcaaaatcatttcttatgtttaaattttcgaacc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3888920 |
ctaacattaaaggttccc--gtagatagggagataaagtaaatttagttatgcccaaaagcttatatcaaaatcatttcttatgtttaaattttcgaacc |
3888823 |
T |
|
| Q |
118 |
attgaatgttcatatatatatgatgtaaatttaagtttgtaaccacacgaacgtcgctcctaacaagtaaca |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3888822 |
attgaatgttcatat--atatgatgtaaatttaagtttgtaaccacacgaacgtcgctcctaacaagtaaca |
3888753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University