View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_11 (Length: 534)
Name: NF7826_low_11
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 3234175 - 3234680
Alignment:
| Q |
15 |
aatgatgtaaagtacaacaactacgtcgaaggcaagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagc |
114 |
Q |
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| T |
3234175 |
aatgatgtaaagtacaacaactacgtcgaaggcaagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagc |
3234274 |
T |
|
| Q |
115 |
tttgttcatctccggtgattttttctctcttaggggatattttttacttgcatcttatnnnnnnntcggaaaggaatatgcattcttcacggcttcgtgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3234275 |
tttgttcatctccggtgattttttctctcttaggggatattttttacttgcatcttatataaaaatgggaaaggaatatgcattcttcacggcttcgtgc |
3234374 |
T |
|
| Q |
215 |
aattcaagggctgtgctatagttacaagcatttaaatttactcactcgaggataaaatataaacaaaaagatagtcgaaaaatttatct--gtggattaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3234375 |
aattcaagggctgtgctatagttacaagcatttaaatttactcactcgaggataaaatataaacaaaaagatagtcgaaaaatttatctatgtggattaa |
3234474 |
T |
|
| Q |
313 |
atttttaaccacacgagatgtagttttttgttgttgctagaaatagcattttcgcactaaaaattggtctctctattttcttaaattcgcgattttggta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3234475 |
atttttaaccacacgagatgtagttttttgttgttgctagaaatagcattttcgcactaaaaattggtctctctattttcttaaattcgcgattttggta |
3234574 |
T |
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| Q |
413 |
cttttttcttcacgaatttggtttccacggatatgaaatttctatactatattaactacaaatattatttaactcaccaatataagtatatattaaaagt |
512 |
Q |
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| T |
3234575 |
cttttttcttcacgaatttggtttccacggatatgaaatttctatactatattaactacaaatattatttaactcaccaatataagtatatattaaaagt |
3234674 |
T |
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| Q |
513 |
acctgt |
518 |
Q |
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|||||| |
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| T |
3234675 |
acctgt |
3234680 |
T |
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