View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_17 (Length: 450)
Name: NF7826_low_17
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 153 - 433
Target Start/End: Original strand, 41795516 - 41795798
Alignment:
| Q |
153 |
gtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatggt |
252 |
Q |
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| T |
41795516 |
gtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaagatctaagaattgatgctagacggcatttagtcatggt |
41795615 |
T |
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| Q |
253 |
ttgatttaagcaacaa--aaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatttccccatattaaca |
350 |
Q |
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| T |
41795616 |
ttgatttaagtaaacagcaaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatttccccatattaaca |
41795715 |
T |
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| Q |
351 |
aagagcaagtttacatgccaaatttcttttttaataagtaattgattgcattgctctaactattttttaccaaccaacttact |
433 |
Q |
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| T |
41795716 |
aagagcaagtttacatgccaaatttcttttttaataagtaattgattgcattgctctaactattttttaccaaccaacttact |
41795798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 151 - 381
Target Start/End: Original strand, 41760725 - 41760968
Alignment:
| Q |
151 |
ttgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
250 |
Q |
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| T |
41760725 |
ttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
41760824 |
T |
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| Q |
251 |
gtttgatttaagcaacaaaa-ccatgatcttctttcttttgatcatgc------tatt-------ttagatgtatgcatccattaaattttgcaaagatt |
336 |
Q |
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| T |
41760825 |
gtttgatttaagcaacaaaacccatgatcttctttcttttgatcatgcttcttgtattttagaaattagatgtatgcatccattaaattttgcaaagatt |
41760924 |
T |
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| Q |
337 |
tccccatattaacaaagagcaagtttacatgccaaatttcttttt |
381 |
Q |
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| T |
41760925 |
t-cagatattaacaaagagcaagtttccatgccaaatttcttttt |
41760968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 41795382 - 41795457
Alignment:
| Q |
7 |
agaagaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
82 |
Q |
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| T |
41795382 |
agaagaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaatt |
41795457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 41760584 - 41760656
Alignment:
| Q |
10 |
agaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
82 |
Q |
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| T |
41760584 |
agaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaatt |
41760656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
155 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
210 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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