View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_19 (Length: 404)
Name: NF7826_low_19
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 48758253 - 48758633
Alignment:
| Q |
4 |
tcgaataatatagtacactagacaattttacaaatgaaaattgaaagcgtaaaagagaaggttacgggtaagacaatatcaagtgttattatcaagccta |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48758253 |
tcgattaatatagtacactagacaattttacaaatgaaaattgaaagcgtaaaagagaaggttacgggtaagacaatatcaagtgttgttatcaagccta |
48758352 |
T |
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| Q |
104 |
gcttaagcgatgcagcggggtccagttagaaataagacattgcattggaattgaaacttgctaccaaacggtccaaaaagtcatcgtctccttcacgcct |
203 |
Q |
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| T |
48758353 |
gcttaagcgatgcagcggggtccagttagaaataagacattgcattggaattgaaacttgctaccaaacggtccaaaaagtcatcgtctccttcacgcct |
48758452 |
T |
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| Q |
204 |
ttgcaaccttcaacaacactgttgcacttcaattcatctctttacacttttgctaatccaaatccacgtgtcgacctccaattcgccattcttcagatat |
303 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48758453 |
ttgcaacctt---caacactgttgcacttcaattcatctctttacactttagctaatccaaatccacgtgtcgacctccaattcgccattcttcagatat |
48758549 |
T |
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| Q |
304 |
ccctgtcccaccacacta-gtagaattgaattgtactgaaacaaaacaagtaatcaacttat-cccctttcacataacacctcc |
385 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48758550 |
ccctgtcccaccacactaggtagaattgaattgtactgaaacaaaacaagtaatcaacttatccccctttcacataacacctcc |
48758633 |
T |
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