View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_22 (Length: 399)
Name: NF7826_low_22
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 12275323 - 12275702
Alignment:
| Q |
1 |
catattgctaactgttcacatccgggaaactgcatttctcttcttcgcataaatgcaagttctgatttgatgtgtattatagatatagttagtaactaac |
100 |
Q |
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| T |
12275323 |
catattgctaacggttcacatccgggaaactgcatttcccttcttcgcataaatgtaagttctgatttgatgtgtattatggatatagttagtaactaac |
12275422 |
T |
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| Q |
101 |
tatagagagtaaggtgaaataattaaatttgtttacacatgcaggtagcaagtaactcatctcaaaatgtagagctaatgctgcaagagagttgcacgga |
200 |
Q |
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| T |
12275423 |
ta--gagagtaaggtgaaataattaaatttgtttacacatgcaggtagcaagtaactcatctcaaaatgtagagctaatgctgcaagagagttgcacaga |
12275520 |
T |
|
| Q |
201 |
tcaatcaggaagcttagtagtctacacgacagtcgatgttgattcggtccaactagctatgagtggacaagacccttcatgcattgcacttcttccacaa |
300 |
Q |
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| T |
12275521 |
tcaatcaggaagcttagtagtctacacaacagtcgatgttgattcggtccaactagctatgagtggacaagacccttcatgcattgcacttcttccacaa |
12275620 |
T |
|
| Q |
301 |
gggttcatgatagtgccaatggtttcatcaaatgctgatacatcatctgaacaaggtgtcacaggaacaccatcatctactg |
382 |
Q |
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| T |
12275621 |
gggttcatgatagtgccaatggtttcatcaaatgctgatacatcatctgaacaaggtgtcacaggaacaccatcatctactg |
12275702 |
T |
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