View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_24 (Length: 395)
Name: NF7826_low_24
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 2077246 - 2076890
Alignment:
| Q |
14 |
atctcaacttcccacccttccatcatcttccaccgtctcccttccatcaccgttaaccacaccaccacccaaagcagagccgccaccgcattccatttca |
113 |
Q |
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| T |
2077246 |
atctcaacttcccacccttccatcatcttccaccgtctcccttccatcaccgttaaccacaccaccacccaaagcagagccgccaccgcattccatttca |
2077147 |
T |
|
| Q |
114 |
tcaaatcaaacacggtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcgatctcttctgtacttccgccat |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2077146 |
tcaaatcaaacaccgtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcgatctcttctgtacttccgccat |
2077047 |
T |
|
| Q |
214 |
ggaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttctctgtattcctacttccccaaaatccacacggaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2077046 |
ggaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttctctgtattcctacttccccaaaatccacacggaa |
2076947 |
T |
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| Q |
314 |
acaaccatatcgtttaaggatatggttggagttgagattgctgcaccgggaaatgcg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
2076946 |
acaaccatatcgtttaaggatatggttggagttgagattgctgcacccgggaatgcg |
2076890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 2074139 - 2073847
Alignment:
| Q |
15 |
tctcaacttcccacccttccatcatcttccaccgtctcccttccatcaccgttaaccacaccaccacccaaagcagagccgccaccgcattccatttcat |
114 |
Q |
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| T |
2074139 |
tctcatcttcccatccttcaatcacgttccaccgtctccccaccgtcgccgtcaaccacaccaccactcaaagcatcgccgccaccgcatttcagttcat |
2074040 |
T |
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| Q |
115 |
caaatcaaacacggtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcgatctcttctgtacttccgccatg |
214 |
Q |
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|||||||||| | |||||| | || | |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
2074039 |
caaatcaaacgccgtcaacatagaaaccaaactccgtcaaatcatccaaacctctgttatcaaagccttcatcatcgacctcttttgtacctccgccatg |
2073940 |
T |
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| Q |
215 |
gaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttctctgtattcctacttccccaaaatccac |
307 |
Q |
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|||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2073939 |
gaaacagcttccgccatgcaaatccctgtttactatttcttcacatccggtgctgctgtactttctctgtattcctacttcccgaaaatccac |
2073847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 353
Target Start/End: Complemental strand, 2069802 - 2069587
Alignment:
| Q |
138 |
aatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcgatctcttctgtacttccgccatggaaacagcttcctccatgctaat |
237 |
Q |
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|||| ||||||||| | || || |||||||| ||||||||| ||||||| |||||| | || || ||||| ||||||||| |||||| ||||| ||| |
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| T |
2069802 |
aatccaaactccgtgagattactcaaacctccgttatcaaatccttcattatcgatatgttttgcacttctgccatggaagttgcttccaccatgggaat |
2069703 |
T |
|
| Q |
238 |
accagtttactatttcttcacatccggtgctgctgtactttctctgtattcctacttccccaaaatccacacggaaacaaccatatcgtttaaggatatg |
337 |
Q |
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|| ||||||||||||||||| || || |||||||| | | |||| |||||||||||| ||||| |||| ||||| | | ||||| ||||| ||| |
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| T |
2069702 |
ccctgtttactatttcttcacttctggagctgctgttttggcactgtgttcctacttcccgaaaattcacagcgaaacggcagtgtcgttcaaggaaatg |
2069603 |
T |
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| Q |
338 |
gttggagttgagattg |
353 |
Q |
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|||||||||||||||| |
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| T |
2069602 |
gttggagttgagattg |
2069587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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