View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_low_25 (Length: 386)

Name: NF7826_low_25
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_low_25
NF7826_low_25
[»] chr4 (4 HSPs)
chr4 (19-301)||(17507135-17507416)
chr4 (70-286)||(23427807-23428022)
chr4 (300-374)||(17507443-17507517)
chr4 (236-292)||(1833943-1833999)
[»] chr7 (5 HSPs)
chr7 (131-294)||(6240468-6240631)
chr7 (131-294)||(6211532-6211695)
chr7 (308-358)||(6211441-6211491)
chr7 (308-358)||(6240376-6240426)
chr7 (120-168)||(2207010-2207058)
[»] chr2 (2 HSPs)
chr2 (119-286)||(16943774-16943941)
chr2 (119-286)||(17014439-17014606)
[»] chr3 (1 HSPs)
chr3 (42-92)||(10922465-10922515)
[»] chr8 (1 HSPs)
chr8 (19-92)||(23388105-23388178)
[»] chr6 (1 HSPs)
chr6 (68-109)||(3597601-3597642)
[»] chr5 (2 HSPs)
chr5 (60-93)||(16598854-16598887)
chr5 (231-292)||(30067036-30067097)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 17507135 - 17507416
Alignment:
Q  19 aacaaactatctaactactttccatcttaactaactctaagttaatctcaactaacttgaattataaactaacattctctcttaattcaagnnnnnnnag 118  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  17507135 aacaaaccatctaactactttctatcttaactaactctaagtttatctcaactaacttgaattataaactaacattctctcttaattcaagtttttt-ag 17507233  T
Q  119 cttcaccatttcaatcatgcttcttattttgacaaatctgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatg 218  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507234 cttcaccattccaatcatgcttcttattttgacaaatatgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatg 17507333  T
Q  219 accttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacactt 301  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507334 accttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacactt 17507416  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 23427807 - 23428022
Alignment:
Q  70 ctaacttgaattataaactaacattctctcttaattcaagnnnnnnnagcttcaccatttcaatcatgcttcttattttgacaaatctgtcaatcttcac 169  Q
    ||||||||||||| |||||| ||| ||| |||||||||||       |||||||||||| ||||||||| |||||  ||||||||||||||||||||  |    
T  23427807 ctaacttgaattaaaaactagcatcctcccttaattcaagttctct-agcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatcttttc 23427905  T
Q  170 agcttctgttaacaaatccattagttgttcctctattgaacaatgtatgaccttaaaaatttctttgttcacttgttctctgataaagtgaaattttgcc 269  Q
    | ||| ||| | || |||   |||||||||||| || | |||||||||||||||||  |||| ||| ||||||||||||||||||||||||||| |||||    
T  23427906 atcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcc 23428005  T
Q  270 ttaatgtgtttgcttct 286  Q
    |  |||||||| |||||    
T  23428006 tctatgtgtttacttct 23428022  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 17507443 - 17507517
Alignment:
Q  300 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatatt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17507443 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacggaatccagcaatatt 17507517  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 1833999 - 1833943
Alignment:
Q  236 gttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatg 292  Q
    |||||| |||||||| |||||||||||| |||||| |||||||||| ||||||||||    
T  1833999 gttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatg 1833943  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 294
Target Start/End: Complemental strand, 6240631 - 6240468
Alignment:
Q  131 aatcatgcttcttattttgacaaatctgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatgaccttaaaaatt 230  Q
    |||||||||||||| || ||||||| || | ||| ||||| |||| || ||||||||   ||||||| ||||  ||  ||||||||||| |||||  |||    
T  6240631 aatcatgcttcttaattggacaaatatgccgatcgtcacaacttcagtaaacaaatcatctagttgtccctcagtttgacaatgtatgatcttaagcatt 6240532  T
Q  231 tctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 294  Q
    ||||  ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6240531 tcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6240468  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 294
Target Start/End: Complemental strand, 6211695 - 6211532
Alignment:
Q  131 aatcatgcttcttattttgacaaatctgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatgaccttaaaaatt 230  Q
    |||||||||||||| || ||||||| || | ||||||||| |||  || ||||||||   ||||||| |||   ||| ||| ||||||| |||||  |||    
T  6211695 aatcatgcttcttaattggacaaatatgccgatcttcacaactttagtaaacaaatcatctagttgtcccttagttggacagtgtatgatcttaagcatt 6211596  T
Q  231 tctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 294  Q
    ||||  ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6211595 tcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6211532  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 6211491 - 6211441
Alignment:
Q  308 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaaccc 358  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  6211491 aatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaaccc 6211441  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 6240426 - 6240376
Alignment:
Q  308 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaaccc 358  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| ||||||||    
T  6240426 aatgagaaatgcaataggcttgcatacttctatcttcatttctttcaaccc 6240376  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 2207058 - 2207010
Alignment:
Q  120 ttcaccatttcaatcatgcttcttattttgacaaatctgtcaatcttca 168  Q
    ||||||||| ||||||| ||||||| ||||| |||| ||||||||||||    
T  2207058 ttcaccattccaatcatacttcttaatttgataaatatgtcaatcttca 2207010  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 16943774 - 16943941
Alignment:
Q  119 cttcaccatttcaatcatgcttcttattttgacaaatctgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatg 218  Q
    ||||||||||| |||||| ||||| |  ||||||||||||||||  |||||| ||| |||||| |||||   | ||||||| ||| ||| |||||| ||     
T  16943774 cttcaccattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggata 16943873  T
Q  219 accttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttct 286  Q
    ||||| |  |  || |||||||| || |||||||||||||||||  ||| ||  ||||||||||||||    
T  16943874 accttcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttct 16943941  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 17014439 - 17014606
Alignment:
Q  119 cttcaccatttcaatcatgcttcttattttgacaaatctgtcaatcttcacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatg 218  Q
    ||||||||||| |||||| ||||| |  ||||||||||||||||  |||||| ||| |||||| |||||   | ||||||| ||| ||| |||||| ||     
T  17014439 cttcaccattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggata 17014538  T
Q  219 accttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttct 286  Q
    ||||| |  |  || |||||||| || |||||||||||||||||  ||| ||  ||||||||||||||    
T  17014539 accttcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttct 17014606  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 10922515 - 10922465
Alignment:
Q  42 atcttaactaactctaagttaatctcaactaacttgaattataaactaaca 92  Q
    ||||||||||||| | |||| |||||||||||||| ||||| |||||||||    
T  10922515 atcttaactaactttgagtttatctcaactaactttaattaaaaactaaca 10922465  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 23388105 - 23388178
Alignment:
Q  19 aacaaactatctaactactttccatcttaactaactctaagttaatctcaactaacttgaattataaactaaca 92  Q
    |||||||||| ||| || |||| |||||||||||||   |||| ||||||||| |||||||||| |||| ||||    
T  23388105 aacaaactatataagtattttctatcttaactaacttcgagtttatctcaacttacttgaattaaaaaccaaca 23388178  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 3597642 - 3597601
Alignment:
Q  68 aactaacttgaattataaactaacattctctcttaattcaag 109  Q
    |||||||||||||||| ||||||||| ||| |||||||||||    
T  3597642 aactaacttgaattatcaactaacatcctcccttaattcaag 3597601  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 16598854 - 16598887
Alignment:
Q  60 ttaatctcaactaacttgaattataaactaacat 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  16598854 ttaatctcaactaacttgaattaaaaactaacat 16598887  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 30067097 - 30067036
Alignment:
Q  231 tctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatg 292  Q
    |||||||||||||||||||||| ||| ||||| ||||| | ||| || ||||||||| ||||    
T  30067097 tctttgttcacttgttctctgagaaaatgaaactttgcttcaatatgcttgcttcttccatg 30067036  T

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