View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_low_26 (Length: 372)

Name: NF7826_low_26
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_low_26
NF7826_low_26
[»] chr1 (2 HSPs)
chr1 (10-348)||(6301186-6301526)
chr1 (10-65)||(2346535-2346591)
[»] chr6 (4 HSPs)
chr6 (155-347)||(2198192-2198384)
chr6 (10-142)||(2197632-2197763)
chr6 (18-60)||(24200051-24200094)
chr6 (10-44)||(25335413-25335447)
[»] chr3 (3 HSPs)
chr3 (169-303)||(11307584-11307718)
chr3 (10-141)||(11307443-11307573)
chr3 (341-372)||(20938048-20938079)
[»] scaffold0286 (1 HSPs)
scaffold0286 (10-142)||(22511-22642)
[»] chr5 (4 HSPs)
chr5 (10-65)||(30321365-30321421)
chr5 (312-347)||(3697416-3697451)
chr5 (312-347)||(3699778-3699813)
chr5 (312-347)||(3869337-3869372)
[»] chr2 (1 HSPs)
chr2 (10-65)||(3648845-3648901)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 6301186 - 6301526
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaaatttaaaccttcggtcnnnnnnntaacataaaccttgaatcatg 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||       ||||||||||||| |||||||    
T  6301186 aagaatatcaaaaatatgatttcagttgattgtacttaaggacttgctaaaataaactttaaaccttccgtcaaaaaaataacataaaccttaaatcatg 6301285  T
Q  110 ggctgattgaaaaagtttattatgcaccttaacnnnnnnnnnnnn--ttttaagacctgacttaacaaagaaagtatgaaaatgnnnnnnnaaattaaca 207  Q
    ||||||||||||||||||||||||| ||| |||              ||||||||||||||||||||||||||||||| |||||       |||||||||    
T  6301286 ggctgattgaaaaagtttattatgctcctaaacaaaaaaaaaaaaatttttaagacctgacttaacaaagaaagtatggaaatgtttttctaaattaaca 6301385  T
Q  208 cgtggcagcgtcaaacaatactagccttctcatgtaattgacaattaatgtgttgatggactaatgaaattagtgaatcaactaattaatgaaatggatt 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6301386 cgtggcagggtcaaacaatactagccttctcatgtaattgacaattaatatgttgatggactaatgaaattagtgaatcaactcattaatgaaatggatt 6301485  T
Q  308 tcttctatgatggggtgttggtcaaatgatatgattttatg 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6301486 tcttctatgatggggtgttggtcaaatgatatgattttatg 6301526  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 2346591 - 2346535
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaa 65  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  2346591 aagaatatcaaaaatatgatttcaattgattgtatttaacggacttgctaaaataaa 2346535  T

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Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 155 - 347
Target Start/End: Original strand, 2198192 - 2198384
Alignment:
Q  155 ttttaagacctgacttaacaaagaaagtatgaaaatgnnnnnnnaaattaacacgtggcagcgtcaaacaatactagccttctcatgtaattgacaatta 254  Q
    |||||||||||  |||||||||||||||| | |||||       ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2198192 ttttaagacctttcttaacaaagaaagtacggaaatgtttttctaaattaacatgtggcggcgtcaaacaatactagccttctcatgtaattgacaatta 2198291  T
Q  255 atgtgttgatggactaatgaaattagtgaatcaactaattaatgaaatggatttcttctatgatggggtgttggtcaaatgatatgattttat 347  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198292 atgtgttgatggattagtgaaattagtgaatcaactaattaatgaaatggatttcttctatgatggggtgttggtcaaatgatatgattttat 2198384  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 2197632 - 2197763
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaaatttaaaccttcggtcnnnnnnntaacataaaccttgaatcatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||       ||||||||||||| || ||||    
T  2197632 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaacgttaaaccttccgtc-aaaaaataacataaaccttaaaccatg 2197730  T
Q  110 ggctgattgaaaaagtttattatgcaccttaac 142  Q
    |||||||| |||||||||||||||| |||||||    
T  2197731 ggctgatttaaaaagtttattatgctccttaac 2197763  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 24200094 - 24200051
Alignment:
Q  18 caaaaatatgatttcagttgattgtatttaa-ggacttgctaaa 60  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  24200094 caaaaatatgatttcagttgattgtatttaacggacttgctaaa 24200051  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 25335413 - 25335447
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtat 44  Q
    ||||||||||||||||||||||||||| |||||||    
T  25335413 aagaatatcaaaaatatgatttcagttaattgtat 25335447  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 11307584 - 11307718
Alignment:
Q  169 ttaacaaagaaagtatgaaaatgnnnnnnnaaattaacacgtggcagcgtcaaacaatactagccttctcatgtaattgacaattaatgtgttgatggac 268  Q
    ||||||||||||||||| ||||        ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11307584 ttaacaaagaaagtatggaaatatttttctaaattaacatgaggcggcgtcaaacaatactagccttctcatgtaattgacaattaatgtgttgatggac 11307683  T
Q  269 taatgaaattagtgaatcaactaattaatgaaatg 303  Q
    ||||||||||||||||||||| |||||||||||||    
T  11307684 taatgaaattagtgaatcaacaaattaatgaaatg 11307718  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 11307443 - 11307573
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaaatttaaaccttcggtcnnnnnnntaacataaaccttgaatcatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||       ||||||||||||| |||||||    
T  11307443 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaacgttaaaccttccgtcaaaaaaataacataaaccttaaatcatg 11307542  T
Q  110 ggctgattgaaaaagtttattatgcaccttaa 141  Q
    ||||||||| ||||||||||||||| ||||||    
T  11307543 ggctgattg-aaaagtttattatgctccttaa 11307573  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 341 - 372
Target Start/End: Original strand, 20938048 - 20938079
Alignment:
Q  341 attttatgtgtttgtctaacatgtgcaatatt 372  Q
    ||||||||||||||||||||||||||||||||    
T  20938048 attttatgtgtttgtctaacatgtgcaatatt 20938079  T

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Target: scaffold0286 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 22642 - 22511
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaaatttaaaccttcggtcnnnnnnntaacataaaccttgaatcatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||       ||||||||||||| || ||||    
T  22642 aagaatatcaaaaatatgatttcagttgattgtatttaaggacttgctaaaataaacgttaaaccttccgtc-aaaaaataacataaaccttaaaccatg 22544  T
Q  110 ggctgattgaaaaagtttattatgcaccttaac 142  Q
    |||||||| |||||||||||||||| |||||||    
T  22543 ggctgatttaaaaagtttattatgctccttaac 22511  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 30321421 - 30321365
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaa 65  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  30321421 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaa 30321365  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 3697451 - 3697416
Alignment:
Q  312 ctatgatggggtgttggtcaaatgatatgattttat 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  3697451 ctatgatggggtgttggtcaaatgatatgattttat 3697416  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 3699813 - 3699778
Alignment:
Q  312 ctatgatggggtgttggtcaaatgatatgattttat 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  3699813 ctatgatggggtgttggtcaaatgatatgattttat 3699778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 3869337 - 3869372
Alignment:
Q  312 ctatgatggggtgttggtcaaatgatatgattttat 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  3869337 ctatgatggggtgttggtcaaatgatatgattttat 3869372  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 3648901 - 3648845
Alignment:
Q  10 aagaatatcaaaaatatgatttcagttgattgtatttaa-ggacttgctaaaataaa 65  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  3648901 aagaatatcaaaaatatgatttcagttaattgtatttaacggacttgctaaaataaa 3648845  T

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