View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_27 (Length: 366)
Name: NF7826_low_27
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 20670699 - 20670517
Alignment:
| Q |
1 |
agtccttcaatttctaaacctagttgttaaaatttcataaattttctctaccactgaagttgagacttatttttgctgatatgtcaagtttaataataag |
100 |
Q |
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| T |
20670699 |
agtccttcaatttctaaacctagttgttaaaatttcataaattttctgcaccactgaagttgagacttatttttgctgatatgtcaagtttaataataag |
20670600 |
T |
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| Q |
101 |
ctagcaagtcacagggtgatgtggcatcgcatatgtgaatgaaattttaatattttattttccatacattaaagtactgtttt |
183 |
Q |
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| T |
20670599 |
ctaacaagtcacagggtgatgtggcatcgcatatgtgaattaaattttattattttattttccatacattaaagtactgtttt |
20670517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 223 - 360
Target Start/End: Complemental strand, 20670476 - 20670339
Alignment:
| Q |
223 |
tcagattttccaaaaatatgcattgtcatcgtgacttgacagctcattgttcaccgacacattagcaaaaaatgaacctaaaatgcagtggtagagaaaa |
322 |
Q |
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| T |
20670476 |
tcagattttccaaaaatatacattgtcatcgtgacttgacagctcattgttcaccgacacatcagcaaaaaataaacctaaaatgcagtggtagagaaaa |
20670377 |
T |
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| Q |
323 |
tttctgaaatttaaaaatttgatgactatattcttcga |
360 |
Q |
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| T |
20670376 |
tttctgaaatttaaaaatttgatgactatattcttcga |
20670339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 27547289 - 27547365
Alignment:
| Q |
35 |
tcataaattttctctaccactgaagttgagacttatttttgctgatatgtcaagtttaataataagctagcaagtca |
111 |
Q |
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| T |
27547289 |
tcataaattttctctaccactgaattcgagagttatatttgctgatgtgtcaagttgaataatgagctggcaagtca |
27547365 |
T |
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