View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_28 (Length: 361)
Name: NF7826_low_28
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 35020073 - 35019735
Alignment:
| Q |
10 |
aagaatatcgcagataatgattcgatcttactgaatgaaattacaatgaggaatcatacattgggattctagttaaggatagattagtgcaattaaacct |
109 |
Q |
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| T |
35020073 |
aagaaaatcgcagataatgattcgatcttactgaatgaaattacaatgaggaatcatacattgggattctagttaaggattgattagtgcaattaagcct |
35019974 |
T |
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| Q |
110 |
aaaaacgtagttgttttacacccaatatattgagtnnnnnnnnn--gaccattatacagaccaaaaatacttgcgtgccaattctataacacttggttaa |
207 |
Q |
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| T |
35019973 |
aaaaacgtagttgttttacacacaatatattgagtaaaaaaaaaaagaccattatacagaccaaaaatatttgcgtaccaattctataacacttggttaa |
35019874 |
T |
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| Q |
208 |
acnnnnnnngcatatccactaaaatttccgtacatacgtaagttctacacataaaaaccaagttctactcaccgatagtaaatttagtactatttagtga |
307 |
Q |
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| T |
35019873 |
acaaaaaaagcatatccactaaaatttccgtacatacgtaagttctacacatacaaaccaagttctactgaccgatagtaaatttagtactatttagtga |
35019774 |
T |
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| Q |
308 |
ttactttccttgccaacaggatggaactaactattttat |
346 |
Q |
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| T |
35019773 |
ttactttccttgccaacagaatggaactaactattttat |
35019735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 35029302 - 35029223
Alignment:
| Q |
267 |
aagttctactcaccgatagtaaatttagtactatttagtgattactttccttgccaacaggatggaactaactattttat |
346 |
Q |
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| T |
35029302 |
aagttctactcaccgatggtaaatttagtactatttagtgattactttccttgccaacagaatggaactaactattttat |
35029223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 35370790 - 35370828
Alignment:
| Q |
47 |
aaattacaatgaggaatcatacattgggattctagttaa |
85 |
Q |
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| T |
35370790 |
aaattgcaatgaggaatcatatattgggattctagttaa |
35370828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 35378589 - 35378630
Alignment:
| Q |
46 |
gaaattacaatgaggaatcatacattgggattctagttaagg |
87 |
Q |
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| T |
35378589 |
gaaattgcaatgaggaatcatatattgggattctagttaagg |
35378630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 34856012 - 34855950
Alignment:
| Q |
27 |
tgattcgatcttactgaatgaaattacaatgaggaatcatacattgggattctagttaaggat |
89 |
Q |
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| T |
34856012 |
tgattcaatctttctaaacgaaattgcaatgatgaatcatatattgggattctagttgaggat |
34855950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 31701026 - 31701062
Alignment:
| Q |
53 |
caatgaggaatcatacattgggattctagttaaggat |
89 |
Q |
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| T |
31701026 |
caatgaggaatcataaattgagattctagttaaggat |
31701062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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