View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_30 (Length: 345)
Name: NF7826_low_30
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 16499218 - 16499528
Alignment:
| Q |
18 |
atagcaatattgcattacaaccacatatttatattgaaagtccattataaatattgcattctaggagaacattatgcttattgattatttgatgaattat |
117 |
Q |
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| T |
16499218 |
atagcaatattgcattacaaccacatatttatattgaaagtccattataaatattgcattctaggacaacattacgcttattgattatttgatgaattat |
16499317 |
T |
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| Q |
118 |
tgtttaaatattgtatagaggtttgtgggtgttacactagacccattaaaaatacctcttatactaggttgtttaggtaacat-gtttatcgtatactcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16499318 |
tgtttaaatattgtatagaggtttgtgggtgttatactagacctattaaaaatacgtcttatactaggttgtttaggtaacatggtttatcgtatactcc |
16499417 |
T |
|
| Q |
217 |
ccccaaatatatggtaaatcttaaaaggctctacaaaagttaataaaattatatattacacacatctacttgaaatatcattcttacccttgttatgaaa |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16499418 |
ccccaaatatatggtaaatcttaaaaggctccacaaaagttaataaaattatatattacacacatctacttgaaatatcattcttacccttgttatgaaa |
16499517 |
T |
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| Q |
317 |
taaataaaaaa |
327 |
Q |
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||||||||||| |
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| T |
16499518 |
taaataaaaaa |
16499528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 16508142 - 16508464
Alignment:
| Q |
18 |
atagcaatattgcattacaaccacatatttatattgaaagtccattataaatattgcattctaggagaacattatgcttattgattatttgatgaattat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16508142 |
atagcaatattgcattacaaccacatatttatattgaaagtctattaaaaatattgcattctaggacaacattatgcttattgattatttgatgaattat |
16508241 |
T |
|
| Q |
118 |
tgtttaaatattgtatagaggtttgtgggtgttacactagacccattaaaaatacctcttatactaggttgtttaggtaacat-gtttatcgtatactcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
16508242 |
tgtttaaatattgtatagaggtttgtgggtgttacactagacccattaaaaatacctcttatactaggttgtttaggtaacatggtttatcatatactcc |
16508341 |
T |
|
| Q |
217 |
ccccaaatatatggtaaatcttaaaaggctctacaaaagttaataaaattatatattacacacatctacttgaaatatcattcttacccttgttatgaaa |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16508342 |
ccccaaatatatggtaaatcttaaaaggcttcacaaaagttaataaaattatatattacacacatttacttgaaatatcattcttacccttgttatgaaa |
16508441 |
T |
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| Q |
317 |
taaat-aaaaaacacaacaccaa |
338 |
Q |
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||||| ||||||||||||||||| |
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| T |
16508442 |
taaataaaaaaacacaacaccaa |
16508464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 16497575 - 16497666
Alignment:
| Q |
249 |
acaaaagttaataaaattatatattacacacatctacttgaaatatcattcttacccttgttatgaaataaa-taaaaaacacaacaccaaa |
339 |
Q |
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||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||| || |||| ||||||||||||||||||| |
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| T |
16497575 |
acaaaagttaataaaattataaattacacgcatctaattgaaatatcattcttacaattgttataaattaaattaaaaaacacaacaccaaa |
16497666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 16505271 - 16505373
Alignment:
| Q |
238 |
taaaaggctctacaaaagttaataaaattatatattacacacatctacttgaaatatcattcttacccttgttatgaaataaa-taaaaaacacaacacc |
336 |
Q |
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|||||| ||| ||||||||||||||||||||| ||||||| ||| || ||||||| |||||||||| ||||||| || |||| |||||||||||||||| |
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| T |
16505271 |
taaaagcctccacaaaagttaataaaattataaattacacgcatttaattgaaatgtcattcttacaattgttataaattaaattaaaaaacacaacacc |
16505370 |
T |
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| Q |
337 |
aaa |
339 |
Q |
| |
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||| |
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|
| T |
16505371 |
aaa |
16505373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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