View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_low_31 (Length: 339)
Name: NF7826_low_31
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 2139850 - 2139545
Alignment:
| Q |
20 |
agcatttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139850 |
agcatttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttt |
2139751 |
T |
|
| Q |
120 |
tctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139750 |
tctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
2139651 |
T |
|
| Q |
220 |
caagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139650 |
caagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcac |
2139551 |
T |
|
| Q |
320 |
acaggt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
2139550 |
acaggt |
2139545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 2067157 - 2066856
Alignment:
| Q |
20 |
agcatttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttt |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||| || ||||||||| |
|
|
| T |
2067157 |
agcatttcatccaaaacattcagttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttactgcattcacttt |
2067058 |
T |
|
| Q |
120 |
tctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
219 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2067057 |
tctgtttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
2066958 |
T |
|
| Q |
220 |
caagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcac |
319 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
2066957 |
caggattgcctctgataagcttcttggttttcctaaaacagcatcttggaattccagcacagattgttgctcatgggatggcattaaatgtcatgagcac |
2066858 |
T |
|
| Q |
320 |
ac |
321 |
Q |
| |
|
|| |
|
|
| T |
2066857 |
ac |
2066856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 2136617 - 2136315
Alignment:
| Q |
20 |
agcatttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttt |
119 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
2136617 |
agcatttcatccaaaagaccaatttcaaaatattcaaatacaatggtgtttgtgtggtctcatgttttgtttgtaattttttttttcctt-attcacttc |
2136519 |
T |
|
| Q |
120 |
tctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2136518 |
tctctttcacatttactacatgtttacctcaaattcagccaaaatgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
2136419 |
T |
|
| Q |
220 |
caagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcac |
319 |
Q |
| |
|
|| | ||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2136418 |
taacttagcctctgatgatcttcttggttatcctaaaacatcatcttggaattccagcacagattgctgctcatgggatggcattaaatgtcataagcac |
2136319 |
T |
|
| Q |
320 |
acag |
323 |
Q |
| |
|
|||| |
|
|
| T |
2136318 |
acag |
2136315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 2127246 - 2126941
Alignment:
| Q |
20 |
agcatttcatccaaaacacacagttcaaaatattcaaata--caatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcact |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||| | |||||| |||||||||||||||| |||||||| |
|
|
| T |
2127246 |
agcatttcatccaaaacattcagttcaaaatattaaaatatacaatggtgtttgtcaggtctcttgctttgttactaaaatttcttttcctgtattcact |
2127147 |
T |
|
| Q |
118 |
tttctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatc |
217 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2127146 |
tttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatc |
2127047 |
T |
|
| Q |
218 |
aacaagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagc |
317 |
Q |
| |
|
|| || | ||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
2127046 |
aataacttagcctctgatgatcttcttggttatcctaaaacatcatcttggaattccagcacagattgttgctcatgggatggcattaaatgtcatgagc |
2126947 |
T |
|
| Q |
318 |
acacag |
323 |
Q |
| |
|
|||||| |
|
|
| T |
2126946 |
acacag |
2126941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 2099980 - 2099682
Alignment:
| Q |
24 |
tttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttttctc |
123 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
2099980 |
tttcatccaaaacattcacttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctgtattcacttttcac |
2099881 |
T |
|
| Q |
124 |
tttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaacaag |
223 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2099880 |
tttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataac |
2099781 |
T |
|
| Q |
224 |
attgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcacaca |
322 |
Q |
| |
|
| ||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2099780 |
ttagcctctgataatcttctcggttatccaaaaacagcatcttggaactccagcacagattgttgttcatgggatggcattaaatgtcatgagcacaca |
2099682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 323
Target Start/End: Complemental strand, 2074237 - 2073955
Alignment:
| Q |
40 |
cagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttttctctttcacatttactaca |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
2074237 |
cagttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttagtaaaatttctttttctttattcactcttctctttcgcatttactaca |
2074138 |
T |
|
| Q |
140 |
tctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaacaagattgcctctgataagc |
239 |
Q |
| |
|
| ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| | | |
|
|
| T |
2074137 |
tgttttcctcaaattcatccaaagtgtcatggtgatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctgatgatc |
2074038 |
T |
|
| Q |
240 |
ttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcacacag |
323 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |
|
|
| T |
2074037 |
ttcttggttatcctaaaacatcatcttggaattccagcacagattgttgctcatgggat-gcgttaaatgtcatgagcacacag |
2073955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 2690732 - 2690998
Alignment:
| Q |
57 |
atacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttttctctttcacatttactacatctttacctcaaattca |
156 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| || ||| | ||||||| ||| ||| ||| ||||||| |
|
|
| T |
2690732 |
atacaatggtgtttgtctggtctcttgttttgttagtaaaatttcttttcctttattcactattttctcttttatttactgcatgttttcctgaaattca |
2690831 |
T |
|
| Q |
157 |
gccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaacaagattgcctctgataagcttcttggttatcctaaa |
256 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||||| ||||| |||||||||||| |
|
|
| T |
2690832 |
gccaaagtgtcatccatatgaaagccatgccttgttgcaatttaaggaaggctttgttatcaataacctagcctcggataatcttctcggttatcctaaa |
2690931 |
T |
|
| Q |
257 |
acagcatcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcacacag |
323 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2690932 |
acggcagcttggaattccagcacagattgctgctcgtgggatggaattaaatgtcacgagcacacag |
2690998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 87 - 321
Target Start/End: Original strand, 2244587 - 2244821
Alignment:
| Q |
87 |
tgtttgtaaaatttcttttcctttattcacttttctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgc |
186 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2244587 |
tgttagtaaaatttatattcctttattcaattttctctttcacatttactacatgttttcatcaaattcagccaaagtgtcatcaatatgaaagccaagc |
2244686 |
T |
|
| Q |
187 |
cttgttgcaatttaaggaaggctttgtcatcaacaagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgc |
286 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || || | ||||| | || ||||| ||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
2244687 |
tttgttgcaattaaagcaaggctttgtcattaataacttagcctcagcaaatcttctaagttatccgaaaacagcttcatggaattccagcacagattgc |
2244786 |
T |
|
| Q |
287 |
tgctcatgggatggcattaaatgtcacgagcacac |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2244787 |
tgctcatgggatggcattaaatgccacgagcacac |
2244821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 2058888 - 2058605
Alignment:
| Q |
20 |
agcatttcatccaaaacacacagttcaaaatattcaaatacaat---ggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcac |
116 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| | ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2058888 |
agcatttcattcaaaactttcagctcaaaatattaagatacaatattggtgtttgtctggtctcttgttttgtttgtaaaatttcttttcctttattcac |
2058789 |
T |
|
| Q |
117 |
ttttctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcat |
216 |
Q |
| |
|
||||| |||||||||||||||||| ||| || |||| |||||||||||||| | ||||||||||||| || || |||||||||||||||||| ||| |
|
|
| T |
2058788 |
ttttcactttcacatttactacatgtttttctttaattaagccaaagtgtcatgatgatgaaagccatgctttcttacaatttaaggaaggctttaacat |
2058689 |
T |
|
| Q |
217 |
caacaagattgcctctgataagcttcttggttatcctaaaacagcatcatggaattccagcacagattgctgctcatgggatgg |
300 |
Q |
| |
|
|||||||| ||||| || | | ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2058688 |
caacaagaaagcctccgagtaccctctcagttatcctaaagcagcatcttggaattccagcacagattgctgctcatgggatgg |
2058605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 61 - 323
Target Start/End: Complemental strand, 2115301 - 2115051
Alignment:
| Q |
61 |
aatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttttctctttcacatttactacatctttacctcaaattcagcca |
160 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
2115301 |
aatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttctctttcacatttactacatgttttcctcaaattcatcca |
2115202 |
T |
|
| Q |
161 |
aagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaacaagattgcctctgataagcttcttggttatcctaaaacag |
260 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||| | ||||| ||| |||| || |
|
|
| T |
2115201 |
aagtgtcatggtgatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcc------------catggttctccaaaaatag |
2115114 |
T |
|
| Q |
261 |
catcatggaattccagcacagattgctgctcatgggatggcattaaatgtcacgagcacacag |
323 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2115113 |
catcttggaattccagcacagattgctgctcatgggatggcattaaatgtcatgagcgcacag |
2115051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 1695639 - 1695756
Alignment:
| Q |
93 |
taaaatttcttttcctttattcacttttctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgtt |
192 |
Q |
| |
|
|||| ||||||||||||||||| | |||| || ||||||||| || ||| ||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1695639 |
taaagtttcttttcctttattctttgttcttttccacatttac---atgttttcctttagttcagccaaagtgtcatcaagatgaaagccatgccttgtt |
1695735 |
T |
|
| Q |
193 |
gcaatttaaggaaggctttgt |
213 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1695736 |
acaatttaaggaaggctttgt |
1695756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 2120022 - 2119851
Alignment:
| Q |
40 |
cagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttattcacttttctctttcacatttactaca |
139 |
Q |
| |
|
||||| |||| ||| | ||| |||||||||| | ||||||| ||||| || || | |||||||||||||| ||| | |||||||||| | |||||||| |
|
|
| T |
2120022 |
cagtttaaaagattaagatagaatggtgtttctgtggtctcttgtttttttagtccagtttcttttcctttactcattgttctctttcataattactaca |
2119923 |
T |
|
| Q |
140 |
tcttta-cctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggcttt |
211 |
Q |
| |
|
| ||| ||| |||||| |||||||||| | | ||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
2119922 |
tgtttttcctttaattcaaccaaagtgtcgtatagatgaa-gccataccttgttgcaatttaaggaagacttt |
2119851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 2244543 - 2244590
Alignment:
| Q |
22 |
catttcatccaaaacacacagttcaaaatattcaaatacaatggtgtt |
69 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2244543 |
catttcatccaaaacattgagttcaaaatattaaaatacaatggtgtt |
2244590 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 24031912 - 24031851
Alignment:
| Q |
150 |
aaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggcttt |
211 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
24031912 |
aaattcagtcatagggtcatgaatatgaaagccatgccctgttgcaagttaaggaagacttt |
24031851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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