View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_32 (Length: 332)
Name: NF7826_low_32
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 15920591 - 15920908
Alignment:
| Q |
6 |
aaaaaaggaagaagagaatcaaataatgaagccaattaggtttggaaatgatgcgaaagagatggaatatagggttgcaagatcttgcctgctatagaga |
105 |
Q |
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| T |
15920591 |
aaaaaaggaagaagagaatcaaataatgaagccaattaggtttggaaatgatgtgaaagagatggaatatagggttgcaagatcttgcctgctatagaga |
15920690 |
T |
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| Q |
106 |
ataagaaaggaatggggatgtgaataggacacgtttaatttaatgtgttccct-------ctctctataaggaaaaggaagagtgtaggaaagtgttgtg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15920691 |
ataagaaaggaatggggatgtgaataggacacgtttaatttaatgtgttcccttccctgactctctataaggaaaaggaagagtgtaggaaagtgttgtg |
15920790 |
T |
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| Q |
199 |
gggtcattggaactgttgtaattgtctagttgtctcaaatggagggtgtgctgaaaacattgcttgtgtcatgtggaaatggaaccagaatatttggttg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920791 |
gggtcattggaactgttgtaattgtctagttgtctcaaatggaggatgtgctgaaaacattgcttgtgtcatgtggaaatggaaccagaatatttggttg |
15920890 |
T |
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| Q |
299 |
ttgcttctttacttcttt |
316 |
Q |
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|||||||||||||||||| |
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| T |
15920891 |
ttgcttctttacttcttt |
15920908 |
T |
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