View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7826_low_40 (Length: 277)

Name: NF7826_low_40
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7826_low_40
NF7826_low_40
[»] chr6 (18 HSPs)
chr6 (1-261)||(5264191-5264451)
chr6 (1-261)||(5331719-5331980)
chr6 (8-261)||(5444005-5444258)
chr6 (1-234)||(5393043-5393276)
chr6 (1-235)||(5184799-5185033)
chr6 (9-261)||(5394245-5394497)
chr6 (158-245)||(5340471-5340558)
chr6 (123-205)||(5174100-5174182)
chr6 (175-245)||(5360834-5360904)
chr6 (153-235)||(5422130-5422212)
chr6 (176-245)||(5149820-5149889)
chr6 (120-238)||(5107842-5107960)
chr6 (102-206)||(5366462-5366566)
chr6 (117-245)||(5429516-5429644)
chr6 (171-245)||(5137713-5137787)
chr6 (123-205)||(5272967-5273049)
chr6 (153-205)||(5070512-5070564)
chr6 (189-245)||(5092855-5092911)
[»] chr2 (1 HSPs)
chr2 (1-261)||(22589053-22589313)
[»] scaffold0864 (1 HSPs)
scaffold0864 (1-261)||(4318-4578)
[»] chr7 (4 HSPs)
chr7 (192-245)||(34715134-34715187)
chr7 (189-245)||(34719894-34719950)
chr7 (143-261)||(34729749-34729867)
chr7 (189-243)||(34734359-34734413)
[»] chr4 (1 HSPs)
chr4 (102-224)||(6770477-6770599)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5264191 - 5264451
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  5264191 tctgatgacgcacttcagatggttctaaatggtagaacaatggcacaaccttttgtcctatggttctataacacttcattatttttttcacttcatccaa 5264290  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5264291 gcaccatctcgaattggcgtaattttttgagaaaacaattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctctt 5264390  T
Q  201 tgaagctcattatcgtctctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5264391 tgaagctcattatcgtctctaaaaactttaattccagcattttgaagagctgcatatagat 5264451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5331719 - 5331980
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||       || |||||||||    
T  5331719 tctgatgacgcactttagatggttctaaatggtagaacactggcacaacctttagtcctatggttctataacacttcattatttttttcaattcatccaa 5331818  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
     ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||      
T  5331819 acaccatctcgaattgacataattttttgagaaaacaattaaagaaattttggactcttcaattgcacgtaataacgattttgaaatgtgatctcctccg 5331918  T
Q  201 tgaagctcattatcgtc-tctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    ||||| ||||| || || | |||||| ||||||||||||||||||| |||||||||||||||    
T  5331919 tgaagttcattgtcatcttttaaaaattttaattccagcattttgaagagctgcatatagat 5331980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 5444258 - 5444005
Alignment:
Q  8 acgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaagcaccat 107  Q
    |||||||||||| || |||| | |||||||||||| |||||||  |||||||||| || ||  ||| |||||||       || ||||| ||| ||||||    
T  5444258 acgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatgtttttacgacaattcattattttcaccaattcattcaaacaccat 5444159  T
Q  108 ctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagct 207  Q
    | |||||  || ||||||||||| |||| ||||| ||||||||  || | ||||||||| ||| ||||||||| ||||||||||| ||||| ||||||||    
T  5444158 cgcgaatcagcataattttttgaaaaaacaattatagaaatttgagattgttcaattgctcgtgataatgatgatgaaatgtgatatcctctttgaagct 5444059  T
Q  208 cattatcgtctctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    ||||||||||| ||||||| ||||||||||| |||||| |||| ||||| ||||    
T  5444058 cattatcgtctataaaaaccttaattccagccttttgaagagcagcatacagat 5444005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 5393276 - 5393043
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    |||||| |||||||||||  ||  ||| |||||||||||| |  ||||||  || |||||||||||||  ||| |||| ||       || |||||||||    
T  5393276 tctgataacgcacttcagtaggggctacatggtagaacaccggaacaaccacttctcctatggttctaccacagttcactattatttccaattcatccaa 5393177  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
     |||| |||||||||||| |||||||||||||||| ||||| | ||||||| |||||| | ||||||| | ||||||||||||||||||||||||||| |    
T  5393176 acaccgtctcgaattggcataattttttgagaaaacaattataaaaattttagactctccgattgcacttgataatgatgttgaaatgtgatctcctctt 5393077  T
Q  201 tgaagctcattatcgtctctaaaaactttaattc 234  Q
    |||||| ||||||||| | |||||||| ||||||    
T  5393076 tgaagcacattatcgtatgtaaaaactgtaattc 5393043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5184799 - 5185033
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    |||||||||| |||||||| || |||| ||||||||||||||  |||||   |||||||||||||||   |||||||||||       || |||||||||    
T  5184799 tctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatggttctgcgacacttcattatcttttccaattcatccaa 5184898  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
     ||||||||||||||||| |||||||| || |||| ||||| ||||| ||  |||| ||||||||  ||| ||||||||||||| || | |||||||| |    
T  5184899 acaccatctcgaattggcataatttttggaaaaaacaattatagaaacttgagactgttcaattgagcgtgataatgatgttgatatataatctcctctt 5184998  T
Q  201 tgaagctcattatcgtctctaaaaactttaattcc 235  Q
    |||||||||||||| |||  |||||  ||||||||    
T  5184999 tgaagctcattatcatctaaaaaaatcttaattcc 5185033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 5394497 - 5394245
Alignment:
Q  9 cgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaagcaccatc 108  Q
    ||||||||||| || |||| ||||||||||||||  ||||||  ||| || |||||||| | |||||||||||       || ||||| ||  |||||||    
T  5394497 cgcacttcagagggatctacatggtagaacactggaacaaccacttgcccaatggttctttgacacttcattattttttccaattcattcagacaccatc 5394398  T
Q  109 tcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctc 208  Q
     |||||  || ||||| |||||||||| ||||| |||||||   |||| |||||||||  || |||||||||||||||||  |||||||| |||||||||    
T  5394397 gcgaatcagcataattctttgagaaaacaattatagaaattcgagactgttcaattgcgtgtgataatgatgttgaaatgcaatctcctctttgaagctc 5394298  T
Q  209 attatcgtctctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    |||||| ||||||||||| |||||||||  ||||| | |||| ||||| ||||    
T  5394297 attatcatctctaaaaaccttaattccaaaatttttaagagccgcatagagat 5394245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 5340558 - 5340471
Alignment:
Q  158 ttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    ||||||||  |||| || |||||||||||| ||||| |||| |||||||  || |||||||||||||||  |||||||||||||||||    
T  5340558 ttcaattgttcgtagtagtgatgttgaaatttgatcacctctttgaagcgaatcatcgtctctaaaaacagtaattccagcattttga 5340471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 5174182 - 5174100
Alignment:
Q  123 ttttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaag 205  Q
    |||||||||||||| || | ||||||||  ||||||||||||||  ||| || |||| |||||||||||||||||| ||||||    
T  5174182 ttttttgagaaaatgataacagaaatttgagactcttcaattgcttgtagtagtgattttgaaatgtgatctcctctttgaag 5174100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5360904 - 5360834
Alignment:
Q  175 atgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    |||||||||| ||||||| |||||  |||||||||  ||||||| ||||||||||||||||| ||||||||    
T  5360904 atgatgttgagatgtgatatcctctatgaagctcaccatcgtctttaaaaactttaattccaacattttga 5360834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 5422212 - 5422130
Alignment:
Q  153 gactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattcc 235  Q
    |||| ||||||||| ||||  | ||||||||||||||||||||||| |||||||  || |||||| || ||||||||||||||    
T  5422212 gactgttcaattgctcgtaggagtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtccctgaaaactttaattcc 5422130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 5149820 - 5149889
Alignment:
Q  176 tgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    ||||||||||||||||||||||| || |||   || ||| || |||||||||||||||||||||||||||    
T  5149820 tgatgttgaaatgtgatctcctcttttaagagaatcatcatccctaaaaactttaattccagcattttga 5149889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 5107842 - 5107960
Alignment:
Q  120 taattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctcattatcgtctc 219  Q
    ||||||||||||||||| || | ||||||||  || ||||||||||| |||  || |||| ||||||||  || ||||| || ||||  || ||||||||    
T  5107842 taattttttgagaaaatgataatagaaatttcagattcttcaattgctcgttttattgattttgaaatgcaatgtcctcttttaagcgaatcatcgtctc 5107941  T
Q  220 taaaaactttaattccagc 238  Q
    ||||||| || ||||||||    
T  5107942 taaaaacgttgattccagc 5107960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 5366566 - 5366462
Alignment:
Q  102 caccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgtt 201  Q
    ||||||| ||| | ||||||||||||||| ||||  || | |||||||   | || ||||||||| || || | ||||||||||||||||||||||| ||    
T  5366566 caccatcgcgattgggcgtaattttttgaaaaaacgatgatagaaattcgagtctgttcaattgctcgcaagagtgatgttgaaatgtgatctcctcttt 5366467  T
Q  202 gaagc 206  Q
    |||||    
T  5366466 gaagc 5366462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 5429644 - 5429516
Alignment:
Q  117 gcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctcattatcgt 216  Q
    ||||||||| |||| ||||| || | |||||||   |||| |||||||||  || |||||| |||||||||||||||||||| || |||   |  ||| |    
T  5429644 gcgtaatttgttgaaaaaatgataacagaaattcgagactgttcaattgcgtgtgataatgttgttgaaatgtgatctcctcctttaagagaaacatcat 5429545  T
Q  217 ctctaaaaactttaattccagcattttga 245  Q
    | ||||||||  |||||||||||||||||    
T  5429544 ccctaaaaacagtaattccagcattttga 5429516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 5137713 - 5137787
Alignment:
Q  171 aataatgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    |||| ||||||||||||||||||||||| ||||||   || ||||||  | || |||||||||||||| ||||||    
T  5137713 aatagtgatgttgaaatgtgatctcctctttgaagtgaatcatcgtccatgaagactttaattccagccttttga 5137787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 5273049 - 5272967
Alignment:
Q  123 ttttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaag 205  Q
    |||||||||||||| || | ||||||||  |||  |||||||||  ||| || |||| |||||||||||||||||| ||||||    
T  5273049 ttttttgagaaaatgataacagaaatttgagacctttcaattgctagtagtagtgattttgaaatgtgatctcctctttgaag 5272967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 5070512 - 5070564
Alignment:
Q  153 gactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaag 205  Q
    |||| ||||||||| ||||  | ||||||||||||||||||||||| ||||||    
T  5070512 gactgttcaattgctcgtaggagtgatgttgaaatgtgatctcctctttgaag 5070564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 5092911 - 5092855
Alignment:
Q  189 tgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    |||||||||| |||||||  || ||| || |||||||| ||||||||||||||||||    
T  5092911 tgatctcctctttgaagcgaatcatcatccctaaaaacattaattccagcattttga 5092855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22589053 - 22589313
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||       || |||||||||    
T  22589053 tctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatggttctgtaacacttcattattttttccaattcatccaa 22589152  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
     |||||| | |||||||| || ||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||| |    
T  22589153 acaccattttgaattggcatagttttttgagaaaacaattaaagaaatttgagactcttcaattgcacggaataatgatgttgaaatgtaatctcctctt 22589252  T
Q  201 tgaagctcattatcgtctctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    |||||| || ||||||||  ||||||||||||| |||||||| || |||||| ||||||||    
T  22589253 tgaagcccactatcgtcttgaaaaactttaattacagcatttcgaagagctgtatatagat 22589313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4578 - 4318
Alignment:
Q  1 tctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattannnnnnncacttcatccaa 100  Q
    ||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||       || |||||||||    
T  4578 tctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatggttctataacacatcattattttatccaattcatccaa 4479  T
Q  101 gcaccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgt 200  Q
     |||||| | |||||||| || ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  4478 acaccattttgaattggcatagttttttgagaaaacaattaaagaaatttgagactcttcaattgcacgtaataatgatgttgaaatgtaatctcctctt 4379  T
Q  201 tgaagctcattatcgtctctaaaaactttaattccagcattttgatgagctgcatatagat 261  Q
    |||||| || ||||||||  ||||||||||||| |||||||| || |||||| ||||||||    
T  4378 tgaagcccactatcgtcttgaaaaactttaatttcagcatttcgaagagctgtatatagat 4318  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 34715134 - 34715187
Alignment:
Q  192 tctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    |||||| |||||| ||||||||||||||||||||| | ||||||||||||||||    
T  34715134 tctcctggttgaatctcattatcgtctctaaaaacataaattccagcattttga 34715187  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 34719894 - 34719950
Alignment:
Q  189 tgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattttga 245  Q
    ||||| ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||    
T  34719894 tgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttga 34719950  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 34729749 - 34729867
Alignment:
Q  143 agaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcattt 242  Q
    ||||||||| ||||  ||||||||  | || ||||| | ||| || ||||| |||||||||| ||||| ||| ||||||||||| | |||||||||||||    
T  34729749 agaaattttagactgctcaattgcttgcaacaatgacgctgagatctgatcacctcgttgaatctcatcatcatctctaaaaacataaattccagcattt 34729848  T
Q  243 tgatgagctgcatatagat 261  Q
    | | |||||| ||| ||||    
T  34729849 tcaagagctgtatagagat 34729867  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 34734359 - 34734413
Alignment:
Q  189 tgatctcctcgttgaagctcattatcgtctctaaaaactttaattccagcatttt 243  Q
    ||||| |||||||||| ||||| |||| |||||||||| | ||||||||||||||    
T  34734359 tgatcacctcgttgaatctcatcatcgcctctaaaaacataaattccagcatttt 34734413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 6770599 - 6770477
Alignment:
Q  102 caccatctcgaattggcgtaattttttgagaaaataattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctcgtt 201  Q
    |||||||| ||||| || |||||| | ||||||| || || ||||||| | |||| | ||||||| || || | ||   |||| || || ||||||||||    
T  6770599 caccatctagaattagcataatttgtagagaaaacaactatagaaattctagactgtccaattgctcgcaacagtgcgattgatatatgctctcctcgtt 6770500  T
Q  202 gaagctcattatcgtctctaaaa 224  Q
    ||||||||| |||||||||||||    
T  6770499 gaagctcatcatcgtctctaaaa 6770477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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