View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_low_41 (Length: 277)
Name: NF7826_low_41
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36138809 - 36138537
Alignment:
| Q |
1 |
agtatagacacagcatcatattgaatttaaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattttaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36138809 |
agtatagacacagcatcatattgaatttaaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattttaattt |
36138710 |
T |
|
| Q |
101 |
ttcacctccagcattctctattttcgtctgaagctctgaaacctaaaaatgaaggataagtttggctaacttaatttaaataaagatatagcctttgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36138709 |
ttcacctccagcattctctattttcgtctgaagctctgaaacctaaaaatgaaggataagtttggctaacttaatttaaataaagatatagcctttgtta |
36138610 |
T |
|
| Q |
201 |
actgcgaacactgctagaaatcaaaagataaagataaagatgacatgcaaggtcagtcaagcaacaccaaact |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36138609 |
actgcgaacactgctagaaatcaaaagataaagataaagatgacatgcaaggccagtcaagcaacaccaaact |
36138537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30819448 - 30819217
Alignment:
| Q |
1 |
agtatagacacagcatcatattgaatttaaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattttaattt |
100 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30819448 |
agtatagacaaggtatcagattgaattgaaagttct---caatatacaggatgcttacagactgaattttctggaccttcaacttctgagattttaattt |
30819352 |
T |
|
| Q |
101 |
ttcacctccagcattctctattttcgtctgaagctctgaaacctaaaaatgaaggataagtttggctaacttaatttaaataaagatatagcctttgtta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| | || |||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30819351 |
ttcacctccagcattctctattttcttctgaagctccgaaacctaaaaatggggaatccatttgactaacttaagttaaataaagatatagcctttgtta |
30819252 |
T |
|
| Q |
201 |
actgcgaacactgctagaaatcaaaagataaagat |
235 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||| |
|
|
| T |
30819251 |
actgcaaacactgctggatatcaaaagataaagat |
30819217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University