View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_42 (Length: 271)
Name: NF7826_low_42
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 39 - 256
Target Start/End: Original strand, 48758668 - 48758885
Alignment:
| Q |
39 |
cttccttccaaaatggcttctaaactctgtgactcatgcaaatccgccaccgcaactctctactgccgccctgactccgccttcctctgcggcgcttgtg |
138 |
Q |
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| T |
48758668 |
cttccttccaaaatggcttctaaactctgtgactcatgcaaatccgccaccgcaactctctactgccgccctgactccgccttcctctgcggcgcttgtg |
48758767 |
T |
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| Q |
139 |
actccaaagtccacgccgctaacaaactcgcctcccgtcatcctcgcgtcactctctgtgaagtctgcgaacaagcacctgcacatgtcacgtgtaaagc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48758768 |
actccaaagtccacgccgctaacaaactcgcctcccgtcatcctcgcgtcactctctgtgaagtctgcgaacaagcacctgcacatgtcacgtgtaaagc |
48758867 |
T |
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| Q |
239 |
cgatgcagcttctctttg |
256 |
Q |
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|||||||||||||||||| |
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| T |
48758868 |
cgatgcagcttctctttg |
48758885 |
T |
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