View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_low_46 (Length: 250)
Name: NF7826_low_46
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_46 |
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| [»] scaffold0074 (1 HSPs) |
| | |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20205464 - 20205233
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20205464 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
20205365 |
T |
|
| Q |
101 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205364 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatag |
20205265 |
T |
|
| Q |
201 |
ccttaaagtggaagaaattgtgtatggtctct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
20205264 |
ccttaaagtggaagaaattgtgtatggtctct |
20205233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 22099487 - 22099256
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22099487 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
22099388 |
T |
|
| Q |
101 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22099387 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatag |
22099288 |
T |
|
| Q |
201 |
ccttaaagtggaagaaattgtgtatggtctct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22099287 |
ccttaaagtggaagaaattgtgtatggtctct |
22099256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 21972028 - 21971794
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaa---ctttcagaagaatcattttatcttt |
97 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
21972028 |
tataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatcttt |
21971929 |
T |
|
| Q |
98 |
cctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttca |
197 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
21971928 |
cctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttta |
21971829 |
T |
|
| Q |
198 |
tagccttaaagtggaagaaattgtgtatggtctct |
232 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||||| |
|
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| T |
21971828 |
ttggcttaaagtggaagaaattgcgtatggtctct |
21971794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22205019 - 22205197
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
100 |
Q |
| |
|
||||||||||||| || || ||||||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |||| ||||||||||||||| |
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|
| T |
22205019 |
tataggtctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcct |
22205118 |
T |
|
| Q |
101 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
179 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
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|
| T |
22205119 |
ataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac |
22205197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20086144 - 20085921
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
100 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| || |||||||||| | ||||| |||| || |||||||||||| |
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|
| T |
20086144 |
tataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcct |
20086045 |
T |
|
| Q |
101 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatag |
200 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| |||||| ||| || |||||||| | ||| |||||||| ||| |
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|
| T |
20086044 |
ataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaattttatac |
20085945 |
T |
|
| Q |
201 |
ccttaaagtggaagaaattgtgta |
224 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
20085944 |
tgttaaagtggatgaaatggtgta |
20085921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 24385237 - 24385454
Alignment:
| Q |
7 |
tctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataatt |
106 |
Q |
| |
|
||||||| || || |||| |||||||||| | ||||| |||||||||||| ||||||||||||| | ||||| |||| || |||||||||||||||||| |
|
|
| T |
24385237 |
tctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatctttcctataatt |
24385336 |
T |
|
| Q |
107 |
gctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaa |
206 |
Q |
| |
|
|||||||||||||||| | |||||| || | ||| ||||||||||||| |||||| ||| || |||||||| | ||||||||||| ||| | || |
|
|
| T |
24385337 |
gctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattctatactgtaaa |
24385436 |
T |
|
| Q |
207 |
agtggaagaaattgtgta |
224 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
24385437 |
agtggaagaaatggtgta |
24385454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 20238037 - 20237879
Alignment:
| Q |
21 |
ttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccac |
120 |
Q |
| |
|
||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |||| || ||||||||||| |||||||| ||||||||||| |
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|
| T |
20238037 |
ttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccac |
20237938 |
T |
|
| Q |
121 |
aacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
179 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
20237937 |
agtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccac |
20237879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 22132021 - 22131863
Alignment:
| Q |
21 |
ttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccac |
120 |
Q |
| |
|
||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
22132021 |
ttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccac |
22131922 |
T |
|
| Q |
121 |
aacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
179 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
22131921 |
agtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccac |
22131863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 47865 - 48076
Alignment:
| Q |
21 |
ttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccac |
120 |
Q |
| |
|
||||||||||||||| | ||||| |||||| |||| ||||||||||||| | ||||| |||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
47865 |
ttcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgcccaagaaaccac |
47964 |
T |
|
| Q |
121 |
aacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattg |
220 |
Q |
| |
|
| ||||||||| | |||||| ||||||||||||| |||||||||| || |||||||| | ||| |||||| |||| |||||||||||||||| |
|
|
| T |
47965 |
agtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatgc |
48064 |
T |
|
| Q |
221 |
tgtatggtctct |
232 |
Q |
| |
|
||||||| |||| |
|
|
| T |
48065 |
tgtatggcctct |
48076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 16093 - 15915
Alignment:
| Q |
1 |
tataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcct |
100 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| || |||||||||| | ||||| |||| || |||||||||||| |
|
|
| T |
16093 |
tataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcct |
15994 |
T |
|
| Q |
101 |
ataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
179 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| |||||| ||| || |||||||| |
|
|
| T |
15993 |
ataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac |
15915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 5392 - 5588
Alignment:
| Q |
21 |
ttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccac |
120 |
Q |
| |
|
||||||||||||||| | ||||| |||||| |||| ||||||||| ||| | ||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
5392 |
ttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaaccaa |
5491 |
T |
|
| Q |
121 |
aacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaa |
217 |
Q |
| |
|
| ||||||||| | |||||| ||||||||||||| |||||||||| || |||||||| | ||| |||||| |||| ||||||||||||||| |
|
|
| T |
5492 |
agtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaa |
5588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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